JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUP155_chr5_37283137_37376106	0/0	t0013	3903	4	1	3	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0014	3904	4	2	0	0	0	2	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0015	3894	3	3	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0016	3898	3	2	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0017	3894	3	2	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0018	3903	3	0	0	2	0	1	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0019	3903	3	0	0	0	2	1	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0020	3900	3	1	1	0	1	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0021	3903	2	2	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0022	3904	2	0	0	1	0	1	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0023	3904	2	1	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0024	3905	2	2	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0025	3900	2	1	0	0	0	1	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0026	3903	2	0	1	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0027	3898	2	1	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0028	3909	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0029	3910	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0030	3902	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0031	3901	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0032	3891	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0033	3893	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0034	3896	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0035	3896	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0036	3898	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0037	3902	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0038	3901	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0039	3902	1	0	0	0	0	1	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0040	3902	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0041	3893	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0042	3903	1	0	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0043	3903	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0044	3904	1	0	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0045	3906	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0046	3898	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0047	3899	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0048	3901	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0049	3899	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0050	3902	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0051	3903	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0052	3897	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0053	3907	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0054	3901	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0055	3903	1	0	0	0	0	1	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0056	3835	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	t0057	3902	1	0	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP160_chr11_47773118_47853350	1/1	t0001	1020	245	77	44	90	7	25	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	t0002	1020	86	7	15	48	4	12	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	t0003	1020	6	0	3	0	1	2	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	t0004	1020	1	0	0	0	0	1	copy fasta	NUP160	chr11	47773118	47853350
NUP188_chr9_128942699_129012096	1/1	t0001	440	273	73	60	97	14	27	copy fasta	NUP188	chr9	128942699	129012096