JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUP188_chr9_128942699_129012096	0/0	t0002	440	13	0	0	12	0	1	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	t0003	440	3	0	0	0	0	3	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	t0004	440	2	2	0	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	t0005	440	1	0	0	0	0	1	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	t0006	440	1	0	0	1	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	t0007	440	1	0	0	0	0	1	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	t0008	440	1	1	0	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	t0009	440	1	0	0	0	0	1	copy fasta	NUP188	chr9	128942699	129012096
NUP205_chr7_135552917_135653753	1/1	t0001	226	319	74	59	134	14	36	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	t0002	227	20	10	1	6	0	3	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	t0003	226	10	0	0	8	0	2	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	t0004	226	2	2	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	t0005	226	1	0	0	0	0	1	copy fasta	NUP205	chr7	135552917	135653753
NUP210L_chr1_153987690_154160073	1/1	t0001	175	289	80	49	118	8	32	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	t0002	175	1	0	1	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210_chr3_13311235_13425322	1/0	t0001	1543	115	35	31	24	5	19	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/1	t0002	1543	110	6	22	63	6	12	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	t0003	1543	26	9	1	11	2	3	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	t0004	1543	26	0	3	23	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	t0005	1543	24	19	2	1	0	2	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	t0006	1543	8	8	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	t0007	1543	5	0	0	5	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	t0008	1543	3	3	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	t0009	1543	3	3	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	t0010	1543	3	0	0	3	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	t0011	1543	1	0	0	0	1	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	t0012	1543	1	0	1	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	t0013	1543	1	1	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP214_chr9_131120586_131239663	1/1	t0001	1296	216	55	37	82	8	32	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	t0002	1295	5	3	1	0	0	1	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	t0003	1296	4	3	1	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	t0004	1295	1	1	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	t0005	1296	1	1	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	t0006	1296	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	t0007	1296	1	0	1	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	t0008	1295	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	t0009	1296	1	0	0	0	0	1	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	t0010	1296	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	t0011	1296	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	t0012	1296	1	1	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP35_chr2_183119443_183166680	1/1	t0001	565	344	76	54	165	18	29	copy fasta	NUP35	chr2	183119443	183166680
NUP35_chr2_183119443_183166680	0/0	t0002	565	42	1	4	26	0	11	copy fasta	NUP35	chr2	183119443	183166680
NUP35_chr2_183119443_183166680	0/0	t0003	565	11	11	0	0	0	0	copy fasta	NUP35	chr2	183119443	183166680
NUP35_chr2_183119443_183166680	0/0	t0004	565	3	0	3	0	0	0	copy fasta	NUP35	chr2	183119443	183166680
NUP35_chr2_183119443_183166680	0/0	t0005	565	1	0	0	1	0	0	copy fasta	NUP35	chr2	183119443	183166680
NUP35_chr2_183119443_183166680	0/0	t0006	565	1	0	1	0	0	0	copy fasta	NUP35	chr2	183119443	183166680
NUP37_chr12_102068103_102125114	1/1	t0001	1382	252	76	47	87	13	27	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	t0002	1380	73	1	13	54	0	5	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	t0003	1382	55	5	4	40	2	4	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	t0004	1382	9	8	0	0	1	0	copy fasta	NUP37	chr12	102068103	102125114