JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUP37_chr12_102068103_102125114	0/0	t0005	1382	5	0	3	0	0	2	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	t0006	1382	1	1	0	0	0	0	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	t0007	1382	1	1	0	0	0	0	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	t0008	1382	1	0	0	1	0	0	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	t0009	1380	1	0	1	0	0	0	copy fasta	NUP37	chr12	102068103	102125114
NUP42_chr7_23177048_23206006	1/1	t0001	300	325	66	57	148	14	38	copy fasta	NUP42	chr7	23177048	23206006
NUP42_chr7_23177048_23206006	0/0	t0002	300	37	20	7	4	0	6	copy fasta	NUP42	chr7	23177048	23206006
NUP42_chr7_23177048_23206006	0/0	t0003	300	2	2	0	0	0	0	copy fasta	NUP42	chr7	23177048	23206006
NUP43_chr6_149719315_149751529	0/1	t0001	2691	135	25	25	70	2	12	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	1/0	t0002	2689	77	1	18	38	3	16	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0003	2689	25	17	1	3	1	3	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0004	2691	11	0	5	0	3	3	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0005	2691	11	11	0	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0006	2692	9	1	0	6	0	2	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0007	2690	9	4	2	1	0	2	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0008	2688	7	7	0	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0009	2691	6	0	6	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0010	2689	6	5	1	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0011	2689	3	0	2	0	1	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0012	2688	2	0	1	1	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0013	2688	2	0	2	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0014	2691	2	0	0	2	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0015	2687	2	2	0	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0016	2691	2	0	0	2	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0017	2688	2	2	0	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0018	2688	2	2	0	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0019	2690	2	2	0	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0020	2692	1	0	1	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0021	2687	1	1	0	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0022	2691	1	1	0	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0023	2687	1	1	0	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0024	2689	1	0	0	0	0	1	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0025	2692	1	0	0	1	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0026	2689	1	1	0	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0027	2692	1	1	0	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0028	2689	1	0	0	0	0	1	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0029	2689	1	0	1	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0030	2689	1	0	0	1	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0031	1294	1	0	0	1	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	t0032	2689	1	0	1	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP50_chr22_45158925_45193017	0/0	t0001	3740	110	5	9	85	5	6	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0002	3747	84	9	24	41	1	9	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0003	3744	29	0	0	26	0	3	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	1/0	t0004	3745	26	3	14	0	4	4	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/1	t0005	3745	21	3	10	0	2	5	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0006	3744	20	6	4	0	2	8	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0007	3744	10	10	0	0	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0008	3740	10	9	1	0	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0009	3744	7	7	0	0	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0010	3744	5	3	2	0	0	0	copy fasta	NUP50	chr22	45158925	45193017