Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARSA_chr22_50617754_50633152	0/0	t0018	2733	4	0	0	4	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0019	2766	4	2	1	0	0	1	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0020	2767	4	0	0	0	0	4	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0021	2767	3	3	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0022	2733	3	0	1	0	0	2	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0023	2765	3	3	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0024	2733	2	0	1	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0025	2733	2	2	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0026	2733	2	0	0	0	0	2	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0027	2733	2	1	1	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0028	2733	2	0	1	0	0	1	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0029	2733	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0030	2733	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0031	2733	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0032	2733	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0033	2733	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0034	2733	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0035	2733	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0036	2733	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0037	2733	1	0	0	0	0	1	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0038	2733	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0039	2733	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0040	2765	1	0	1	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0041	2733	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0042	2765	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0043	2765	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0044	2767	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0045	2733	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0046	2733	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0047	2734	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0048	2733	1	0	1	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0049	2733	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0050	2733	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0051	2733	1	0	0	0	0	1	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0052	2733	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0053	2733	1	0	0	0	1	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0054	2733	1	0	0	0	0	1	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0055	2733	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0056	2733	1	0	0	0	0	1	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0057	2733	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0058	2734	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	t0059	2733	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSB_chr5_78772209_78990310	1/0	t0001	3251	47	0	8	26	4	8	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0002	3253	45	19	7	18	1	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0003	3253	40	2	4	25	2	7	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0004	3251	18	4	3	7	0	4	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0005	3251	17	1	5	11	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/1	t0006	3251	17	10	3	1	1	1	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0007	3251	13	5	3	3	0	2	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0008	3253	13	3	2	7	1	0	copy fasta	ARSB	chr5	78772209	78990310