JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUP50_chr22_45158925_45193017	0/0	t0061	3740	1	0	0	1	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0062	3740	1	1	0	0	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0063	3740	1	0	0	0	0	1	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0064	3739	1	0	0	1	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0065	3740	1	0	0	1	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0066	3740	1	1	0	0	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0067	3740	1	0	1	0	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0068	3740	1	0	1	0	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0069	3745	1	0	0	0	0	1	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0070	3748	1	0	0	0	0	1	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0071	3747	1	0	0	0	0	1	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0072	3747	1	0	0	1	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0073	3747	1	0	0	0	1	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0074	3747	1	1	0	0	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0075	3749	1	0	0	1	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0076	3748	1	0	0	0	1	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0077	3747	1	0	0	1	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	t0078	3741	1	0	1	0	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP54_chr4_76109664_76153397	1/1	t0001	726	98	27	27	23	10	9	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	t0002	726	98	37	15	33	4	9	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	t0003	726	87	5	12	62	1	7	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	t0004	722	77	7	13	50	1	6	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	t0005	726	7	6	1	0	0	0	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	t0006	726	1	0	0	0	0	1	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	t0007	726	1	1	0	0	0	0	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	t0008	726	1	1	0	0	0	0	copy fasta	NUP54	chr4	76109664	76153397
NUP58_chr13_25296625_25347421	1/0	t0001	2437	217	60	31	100	5	20	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0002	2437	46	0	8	33	0	5	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/1	t0003	2437	35	12	12	0	7	3	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0004	2437	14	0	0	14	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0005	2437	7	0	3	0	3	1	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0006	2437	6	6	0	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0007	2433	4	3	1	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0008	2437	2	0	0	2	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0009	2437	2	0	1	0	1	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0010	2437	2	2	0	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0011	2437	2	0	0	0	0	2	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0012	2437	2	2	0	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0013	2437	2	2	0	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0014	2437	2	2	0	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0015	2437	1	0	1	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0016	2437	1	0	0	0	0	1	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0017	2437	1	1	0	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0018	2437	1	0	0	0	0	1	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0019	2437	1	0	0	0	0	1	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0020	2437	1	0	1	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	t0021	2437	1	0	0	1	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP62CL_chrX_107118427_107211433	1/0	t0001	1201	112	4	21	70	5	11	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	0/1	t0002	1201	95	11	16	60	2	5	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	0/0	t0003	1201	58	46	5	1	2	4	copy fasta	NUP62CL	chrX	107118427	107211433