JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUP62CL_chrX_107118427_107211433	0/0	t0004	1201	8	8	0	0	0	0	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	0/0	t0005	1201	2	0	1	1	0	0	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	0/0	t0006	1201	1	0	0	1	0	0	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	0/0	t0007	1201	1	0	0	0	0	1	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	0/0	t0008	1201	1	0	0	1	0	0	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	0/0	t0009	1201	1	0	0	0	0	1	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	0/0	t0010	1201	1	1	0	0	0	0	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62_chr19_49901825_49934504	0/0	t0001	1791	117	21	23	59	5	9	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0002	1792	36	3	3	27	0	3	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	1/0	t0003	1793	34	8	10	10	0	5	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0004	1792	28	25	1	0	1	1	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0005	1793	26	0	0	26	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0006	1794	19	0	3	14	0	2	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0007	1793	19	11	4	4	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0008	1792	18	0	2	14	0	2	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0009	1792	16	1	7	0	2	6	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/1	t0010	1792	15	5	4	0	1	4	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0011	1792	14	0	14	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0012	1792	12	0	0	5	0	7	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0013	1793	6	3	0	3	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0014	1792	5	4	1	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0015	1793	4	0	0	4	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0016	1792	3	0	0	3	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0017	1794	3	0	1	0	0	2	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0018	1791	3	0	0	3	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0019	1791	3	3	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0020	1791	3	1	0	2	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0021	1792	3	3	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0022	1791	2	2	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0023	1793	2	1	1	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0024	1793	2	0	1	1	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0025	1792	2	0	0	2	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0026	1792	2	2	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0027	1791	1	0	0	0	0	1	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0028	1794	1	0	0	1	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0029	1791	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0030	1793	1	0	0	1	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0031	1794	1	0	0	1	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0032	1793	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0033	1793	1	0	0	0	1	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0034	1792	1	0	0	1	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0035	1792	1	0	0	0	0	1	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0036	1792	1	0	0	1	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0037	1793	1	0	0	0	0	1	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0038	1791	1	0	1	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0039	1792	1	0	1	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0040	1791	1	0	0	0	0	1	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0041	1791	1	0	1	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0042	1792	1	0	0	1	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0043	1792	1	0	0	1	0	0	copy fasta	NUP62	chr19	49901825	49934504