JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUP62_chr19_49901825_49934504	0/0	t0044	1791	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	t0045	1792	1	0	0	0	0	1	copy fasta	NUP62	chr19	49901825	49934504
NUP85_chr17_75200679_75240758	0/1	t0001	162	234	83	50	54	9	37	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	1/0	t0002	163	41	9	11	10	5	5	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	t0003	162	1	0	1	0	0	0	copy fasta	NUP85	chr17	75200679	75240758
NUP88_chr17_5379833_5424662	0/0	t0001	1381	118	14	24	58	5	17	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	1/0	t0002	1386	93	31	35	6	6	14	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0003	1386	47	12	5	27	1	2	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0004	1382	44	0	0	38	0	6	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0005	1381	35	11	4	16	0	4	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0006	1386	6	5	1	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0007	1381	6	5	0	0	1	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0008	1381	5	4	0	1	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/1	t0009	1384	3	0	0	0	2	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0010	1381	3	3	0	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0011	1386	2	0	2	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0012	1381	1	1	0	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0013	1381	1	0	0	0	0	1	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0014	1386	1	0	0	0	1	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0015	1386	1	0	0	1	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0016	1381	1	0	0	1	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0017	1381	1	0	0	1	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0018	1381	1	0	1	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	t0019	1381	1	0	0	1	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP93_chr16_56725129_56855286	0/0	t0001	5776	155	32	16	79	10	18	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/1	t0002	5776	42	7	9	24	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0003	5748	26	2	10	11	1	2	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0004	5776	23	1	5	16	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0005	5771	22	0	6	15	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0006	5776	19	4	5	6	1	3	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0007	5750	12	8	2	0	0	2	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0008	5775	7	1	3	0	0	3	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0009	5777	5	5	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0010	5776	5	0	5	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0011	5776	5	5	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0012	5776	4	4	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0013	5776	3	3	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0014	5776	3	3	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0015	5776	3	3	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0016	5750	3	3	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0017	5776	3	0	0	3	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0018	5776	3	3	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	1/0	t0019	5775	3	0	0	0	0	2	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0020	5776	2	0	2	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0021	5776	2	0	0	2	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0022	5776	2	1	0	1	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0023	5776	2	0	0	2	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0024	5775	2	0	2	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0025	5776	1	0	0	1	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0026	5748	1	0	0	0	0	1	copy fasta	NUP93	chr16	56725129	56855286