JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUP93_chr16_56725129_56855286	0/0	t0027	5748	1	0	0	0	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0028	5748	1	0	0	1	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0029	5776	1	1	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0030	5776	1	0	0	1	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0031	5776	1	0	0	0	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0032	5776	1	0	0	1	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0033	5776	1	1	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0034	5750	1	1	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0035	5776	1	0	0	1	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0036	5776	1	0	0	0	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0037	5776	1	0	1	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0038	5776	1	0	0	1	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0039	5776	1	0	0	1	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0040	5776	1	1	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0041	5776	1	0	0	0	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0042	5776	1	0	0	0	1	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0043	5776	1	0	0	0	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0044	5775	1	0	0	0	1	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0045	5775	1	0	0	0	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	t0046	5776	1	1	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP98_chr11_3670019_3802554	1/1	t0001	1324	318	78	43	153	6	36	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	t0002	1320	12	9	3	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	t0003	1324	3	0	3	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	t0004	1324	2	2	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	t0005	1324	2	0	2	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	t0006	1324	1	1	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	t0007	1324	1	0	0	1	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	t0008	1324	1	0	1	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	t0009	1324	1	0	0	1	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	t0010	1324	1	0	0	1	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUPR1_chr16_28527708_28543974	0/0	t0001	5076	10	0	3	6	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0002	5084	8	0	5	2	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	1/0	t0003	5043	8	7	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0004	5072	7	0	2	5	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0005	5080	7	1	2	3	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0006	5053	7	0	6	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0007	5088	5	0	2	3	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0008	5061	5	2	0	3	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0009	5068	4	0	1	3	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0010	5059	4	0	0	4	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0011	5057	4	0	2	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0012	5045	3	0	1	0	1	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0013	5054	3	3	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0014	5078	3	3	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0015	5061	3	0	0	1	0	2	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0016	5061	3	1	0	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0017	5081	3	0	3	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0018	5089	3	0	2	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0019	5069	3	0	2	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0020	5061	3	0	1	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974