JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUPR1_chr16_28527708_28543974	0/0	t0021	5065	3	1	0	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0022	5041	3	1	0	0	2	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0023	5065	3	0	0	3	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0024	5045	3	2	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0025	5061	2	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0026	5041	2	0	1	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0027	5062	2	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0028	5074	2	2	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0029	5063	2	2	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0030	5069	2	1	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0031	5085	2	0	0	1	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0032	5061	2	0	0	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0033	5069	2	0	0	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0034	5073	2	0	0	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0035	5073	2	0	0	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0036	5065	2	1	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0037	5069	2	0	0	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0038	5061	2	0	0	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0039	5073	2	0	0	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0040	5053	2	0	0	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0041	5077	2	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0042	5053	2	0	0	0	2	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0043	5065	2	0	0	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0044	5069	2	0	0	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0045	5045	2	0	2	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0046	5045	2	0	0	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0047	5057	2	0	1	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0048	5059	2	0	0	0	0	2	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0049	5041	2	0	2	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0050	5043	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0051	5073	1	0	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0052	5041	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0053	5056	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0054	5049	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0055	5067	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0056	5086	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0057	5086	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0058	5073	1	0	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0059	5049	1	0	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0060	5057	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0061	5053	1	0	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0062	5029	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0063	5069	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0064	5057	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0065	5042	1	0	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0066	5072	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0067	5084	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0068	5076	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0069	5072	1	0	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0070	5076	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974