JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUPR1_chr16_28527708_28543974	0/0	t0071	5080	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0072	5083	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0073	5087	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0074	5091	1	0	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0075	5085	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0076	5060	1	0	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0077	5068	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0078	5076	1	0	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0079	5092	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0080	5096	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0081	5075	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0082	5084	1	0	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0083	5068	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/1	t0084	5072	1	0	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0085	5076	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0086	5080	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0087	5067	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0088	5066	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0089	5066	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0090	5082	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0091	5077	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0092	5050	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0093	5060	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0094	5078	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0095	5060	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0096	5081	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0097	5084	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0098	5091	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0099	5093	1	0	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0100	5073	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0101	5079	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0102	5073	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0103	5084	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0104	5067	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0105	5077	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0106	5085	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0107	5089	1	0	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0108	5089	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0109	5067	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0110	5069	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0111	5077	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0112	5081	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0113	5065	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0114	5080	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0115	5073	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0116	5093	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0117	5081	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0118	5061	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0119	5073	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0120	5081	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974