JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
NUPR1_chr16_28527708_28543974	0/0	t0121	5069	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0122	5089	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0123	5057	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0124	5081	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0125	5065	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0126	5069	1	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0127	5073	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0128	5085	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0129	5072	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0130	5076	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0131	5082	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0132	5089	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0133	5081	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0134	5089	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0135	5101	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0136	5065	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0137	5073	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0138	5065	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0139	5065	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0140	5073	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0141	5073	1	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0142	5077	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0143	5061	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0144	5069	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0145	5077	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0146	5073	1	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0147	5085	1	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0148	5077	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0149	5053	1	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0150	5057	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0151	5069	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0152	5073	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0153	5069	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0154	5057	1	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0155	5065	1	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0156	5053	1	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0157	5065	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0158	5081	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0159	5065	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0160	5077	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0161	5048	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0162	5077	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0163	5077	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0164	5053	1	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0165	5057	1	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0166	5065	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0167	5069	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0168	5053	1	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0169	5045	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0170	5061	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974