JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
NUPR1_chr16_28527708_28543974	0/0	t0171	5057	1	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0172	5061	1	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0173	5057	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0174	5061	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0175	5069	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0176	5081	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0177	5077	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0178	5045	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0179	5069	1	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0180	5077	1	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0181	5081	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0182	5081	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0183	5045	1	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0184	5055	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0185	5057	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0186	5065	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0187	5061	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0188	5069	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0189	5049	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0190	5065	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0191	5073	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0192	5069	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0193	5065	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0194	5065	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0195	5065	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0196	5065	1	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0197	5056	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0198	5072	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0199	5045	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0200	5057	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0201	5045	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0202	5069	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0203	5041	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0204	5069	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0205	5057	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0206	5069	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0207	5045	1	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0208	5089	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0209	5057	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0210	5065	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0211	5058	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0212	5085	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0213	5061	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0214	5041	1	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0215	5053	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0216	5093	1	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0217	5025	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0218	5045	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0219	5049	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0220	5055	1	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974