JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUPR1_chr16_28527708_28543974	0/0	t0221	5075	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0222	5066	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0223	5053	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0224	5051	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0225	5075	1	0	1	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0226	5047	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0227	5055	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0228	5059	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0229	5063	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0230	5088	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0231	5073	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0232	5077	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0233	5077	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0234	5085	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0235	5077	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0236	5069	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0237	5081	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0238	5061	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0239	5061	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0240	5061	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0241	5057	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0242	5057	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0243	5060	1	0	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0244	5055	1	0	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0245	5051	1	0	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0246	5043	1	0	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0247	5077	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0248	5084	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0249	4977	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0250	4986	1	0	0	0	0	1	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0251	4990	1	0	0	1	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0252	4994	1	0	0	0	1	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0253	5006	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0254	5042	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0255	5049	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0256	5041	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0257	5045	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0258	5065	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	t0259	5069	1	1	0	0	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR2_chr7_56109681_56121417	1/1	t0001	327	435	93	78	203	16	43	copy fasta	NUPR2	chr7	56109681	56121417
NUPR2_chr7_56109681_56121417	0/0	t0002	327	4	0	0	4	0	0	copy fasta	NUPR2	chr7	56109681	56121417
NUPR2_chr7_56109681_56121417	0/0	t0003	323	3	0	0	0	2	1	copy fasta	NUPR2	chr7	56109681	56121417
NUPR2_chr7_56109681_56121417	0/0	t0004	327	2	2	0	0	0	0	copy fasta	NUPR2	chr7	56109681	56121417
NUPR2_chr7_56109681_56121417	0/0	t0005	327	1	0	0	1	0	0	copy fasta	NUPR2	chr7	56109681	56121417
NUPR2_chr7_56109681_56121417	0/0	t0006	327	1	1	0	0	0	0	copy fasta	NUPR2	chr7	56109681	56121417
NUPR2_chr7_56109681_56121417	0/0	t0007	327	1	0	1	0	0	0	copy fasta	NUPR2	chr7	56109681	56121417
NUPR2_chr7_56109681_56121417	0/0	t0008	327	1	0	1	0	0	0	copy fasta	NUPR2	chr7	56109681	56121417
NUS1_chr6_117670469_117715727	0/0	t0001	3915	217	33	46	107	11	20	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/1	t0002	3916	67	5	10	39	2	10	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0003	3916	46	15	2	29	0	0	copy fasta	NUS1	chr6	117670469	117715727