JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUS1_chr6_117670469_117715727	0/0	t0004	3914	39	19	6	8	2	4	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0005	3916	9	1	0	1	1	6	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0006	3915	6	6	0	0	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0007	3913	5	0	4	1	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0008	3916	4	4	0	0	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0009	3916	4	0	0	3	0	1	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0010	3915	3	0	0	3	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0011	3915	3	3	0	0	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0012	3915	3	0	0	3	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0013	3914	3	3	0	0	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0014	3915	3	3	0	0	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0015	3915	2	0	0	2	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0016	3915	2	2	0	0	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0017	3914	1	1	0	0	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0018	3786	1	0	0	1	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0019	3915	1	0	0	1	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0020	3915	1	0	1	0	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0021	3915	1	0	0	0	0	1	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0022	3915	1	0	0	0	0	1	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0023	3915	1	0	0	1	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0024	3914	1	0	1	0	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0025	3916	1	0	0	1	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0026	3916	1	0	0	0	0	1	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0027	3915	1	0	0	1	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0028	3915	1	1	0	0	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	t0029	3916	1	0	0	1	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	1/0	t0030	3915	1	0	0	0	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUSAP1_chr15_41327881_41386046	1/0	t0001	938	176	57	25	60	7	26	copy fasta	NUSAP1	chr15	41327881	41386046
NUSAP1_chr15_41327881_41386046	0/1	t0002	939	88	11	24	34	4	14	copy fasta	NUSAP1	chr15	41327881	41386046
NUSAP1_chr15_41327881_41386046	0/0	t0003	938	17	8	4	0	2	3	copy fasta	NUSAP1	chr15	41327881	41386046
NUSAP1_chr15_41327881_41386046	0/0	t0004	938	6	4	2	0	0	0	copy fasta	NUSAP1	chr15	41327881	41386046
NUSAP1_chr15_41327881_41386046	0/0	t0005	939	2	0	0	0	1	1	copy fasta	NUSAP1	chr15	41327881	41386046
NUSAP1_chr15_41327881_41386046	0/0	t0006	939	2	0	0	2	0	0	copy fasta	NUSAP1	chr15	41327881	41386046
NUSAP1_chr15_41327881_41386046	0/0	t0007	939	1	0	1	0	0	0	copy fasta	NUSAP1	chr15	41327881	41386046
NUTF2_chr16_67841933_67877567	1/1	t0001	1737	131	23	27	56	3	20	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0002	1738	56	34	13	4	0	5	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0003	1736	16	15	1	0	0	0	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0004	1737	12	8	3	0	1	0	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0005	1736	7	0	3	1	1	2	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0006	1737	5	0	0	5	0	0	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0007	1739	4	0	3	0	1	0	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0008	1736	2	0	0	0	0	2	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0009	1734	2	2	0	0	0	0	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0010	1738	2	0	0	2	0	0	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0011	1737	1	0	0	0	0	1	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0012	1736	1	0	0	1	0	0	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0013	1734	1	1	0	0	0	0	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0014	1737	1	0	0	1	0	0	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0015	1737	1	0	1	0	0	0	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0016	1737	1	0	0	0	0	1	copy fasta	NUTF2	chr16	67841933	67877567