JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUTF2_chr16_67841933_67877567	0/0	t0017	1738	1	0	0	1	0	0	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0018	1738	1	0	0	1	0	0	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0019	1738	1	0	1	0	0	0	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0020	1739	1	0	0	0	0	1	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	t0021	1737	1	1	0	0	0	0	copy fasta	NUTF2	chr16	67841933	67877567
NUTM1_chr15_34338315_34362735	1/1	t0001	627	311	80	67	110	14	38	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	t0002	627	105	13	11	73	2	6	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	t0003	627	28	0	0	28	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	t0004	627	4	4	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	t0005	627	1	1	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	t0006	627	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	t0007	627	1	0	0	0	0	1	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	t0008	627	1	0	0	0	0	1	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	t0009	627	1	1	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	t0010	627	1	1	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM2A_chr10_87220448_87239978	0/0	t0001	654	249	10	52	160	5	22	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0002	654	40	22	12	0	1	5	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	1/0	t0003	654	32	14	6	5	5	1	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0004	654	29	3	7	7	3	9	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0005	654	12	9	0	0	0	3	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0006	654	7	7	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0007	654	5	5	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0008	654	3	0	0	3	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0009	654	3	3	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0010	654	3	3	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0011	654	3	3	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0012	654	3	3	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0013	654	2	2	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0014	654	2	2	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0015	654	2	0	2	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0016	654	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0017	654	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0018	654	1	0	1	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0019	654	1	0	0	1	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0020	654	1	0	0	1	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0021	654	1	0	0	1	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0022	654	1	0	0	1	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	t0023	654	1	0	0	1	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2B_chr10_79698227_79717758	1/0	t0001	657	114	20	32	36	12	13	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	t0002	657	107	46	20	29	2	10	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	t0003	657	39	11	7	19	2	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	t0004	657	17	2	9	3	0	3	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	t0005	657	8	1	0	6	0	1	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	t0006	657	5	5	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	t0007	657	5	5	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	t0008	657	2	2	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	t0009	657	2	1	1	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	t0010	643	1	0	0	0	0	1	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	t0011	657	1	0	1	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	t0012	657	1	0	0	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758