JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUTM2B_chr10_79698227_79717758	0/0	t0013	657	1	0	0	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	t0014	657	1	1	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	t0015	657	1	0	0	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2D_chr10_87352744_87372195	0/0	t0001	793	224	15	43	146	6	14	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	t0002	793	55	7	13	24	1	10	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	t0003	793	46	17	11	9	3	6	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	t0004	793	31	21	4	0	4	2	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	t0005	790	23	8	8	0	1	6	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	t0006	793	12	12	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	t0007	793	5	5	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	t0008	793	4	1	2	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	t0009	790	4	3	1	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	t0010	793	3	3	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	t0011	793	2	0	0	2	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	1/0	t0012	794	1	0	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	t0013	793	1	0	0	0	1	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	t0014	793	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	t0015	793	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	t0016	793	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	t0017	793	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2E_chr10_79821739_79855878	0/1	t0001	3629	91	3	23	47	7	10	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0002	3629	65	18	6	39	2	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0003	3624	44	2	12	24	0	6	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0004	3629	42	2	6	24	1	9	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	1/0	t0005	3619	26	21	3	0	1	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0006	3619	21	0	12	5	0	4	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0007	3629	18	0	0	18	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0008	3629	17	12	1	4	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0009	3624	9	0	0	9	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0010	3624	7	7	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0011	3629	6	0	4	0	0	2	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0012	3626	5	5	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0013	3629	5	0	0	5	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0014	3583	4	4	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0015	3629	4	0	1	0	2	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0016	3629	4	0	0	4	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0017	3629	3	0	0	3	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0018	3629	3	3	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0019	3629	3	3	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0020	3615	2	2	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0021	3629	2	0	1	0	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0022	3629	2	0	0	2	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0023	3629	2	0	0	2	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0024	3615	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0025	3615	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0026	3584	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0027	3619	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0028	3619	1	0	0	0	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0029	3619	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0030	3619	1	0	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878