JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NUTM2E_chr10_79821739_79855878	0/0	t0031	3619	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0032	3629	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0033	3629	1	0	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0034	3629	1	0	0	0	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0035	3629	1	0	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0036	3629	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0037	3629	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0038	3629	1	0	0	0	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0039	3629	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0040	3629	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0041	3629	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0042	3629	1	0	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0043	3629	1	0	0	0	1	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0044	3629	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0045	3629	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0046	3629	1	0	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0047	3624	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0048	3624	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0049	3624	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	t0050	3624	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2F_chr9_94313198_94333644	1/1	t0001	289	321	55	66	132	18	48	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	t0002	289	1	1	0	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2G_chr9_96923843_96944416	1/1	t0001	450	298	83	70	100	14	29	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	t0002	459	46	0	0	43	0	3	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	t0003	459	16	0	0	14	0	2	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	t0004	459	8	8	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	t0005	450	2	2	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	t0006	450	2	0	0	0	0	2	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	t0007	459	1	0	0	1	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	t0008	450	1	1	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NVL_chr1_224222345_224335172	0/1	t0001	327	217	45	43	84	13	31	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	1/0	t0002	327	51	27	3	14	1	5	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	t0003	327	8	7	1	0	0	0	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	t0004	327	5	4	0	0	0	1	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	t0005	327	1	0	1	0	0	0	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	t0006	327	1	0	0	0	0	1	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	t0007	327	1	1	0	0	0	0	copy fasta	NVL	chr1	224222345	224335172
NWD1_chr19_16714847_16822953	0/1	t0001	3466	77	16	13	31	5	11	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0002	3466	68	19	13	26	2	8	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0003	3466	27	1	14	3	5	4	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0004	3466	19	1	9	7	0	2	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	1/0	t0005	3466	16	2	3	9	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0006	3466	9	9	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0007	3466	7	0	1	6	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0008	3465	6	5	1	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0009	3465	6	6	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0010	3466	4	4	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0011	3465	4	3	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0012	3466	4	0	0	4	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0013	3466	3	3	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953