JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NWD1_chr19_16714847_16822953	0/0	t0014	3467	3	0	1	2	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0015	3467	3	0	2	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0016	3465	3	1	2	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0017	3464	2	2	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0018	3466	2	1	0	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0019	3466	2	2	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0020	3465	2	0	1	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0021	3467	2	0	1	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0022	3464	2	2	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0023	3466	2	0	0	0	0	2	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0024	3467	2	0	1	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0025	3466	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0026	3464	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0027	3465	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0028	3466	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0029	3464	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0030	3465	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0031	3466	1	0	0	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0032	3464	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0033	3437	1	0	1	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0034	3466	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0035	3466	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0036	3465	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0037	3466	1	0	0	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0038	3466	1	0	1	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0039	3465	1	0	1	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0040	3466	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0041	3466	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0042	3464	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0043	3466	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0044	3466	1	0	1	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0045	3465	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0046	3466	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0047	3466	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0048	3466	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	t0049	3466	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD2_chr4_37239743_37454463	0/0	t0001	2572	92	16	12	55	0	9	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0002	2572	66	22	11	20	1	12	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	1/0	t0003	2572	37	18	5	3	4	6	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0004	2572	33	0	9	14	1	9	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/1	t0005	2572	15	0	7	5	1	1	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0006	2572	14	7	0	7	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0007	2572	9	0	3	6	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0008	2572	7	1	0	3	0	3	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0009	2572	5	4	1	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0010	2572	5	0	3	1	0	1	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0011	2571	3	2	0	0	0	1	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0012	2572	2	1	1	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0013	2572	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0014	2572	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463