JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NWD2_chr4_37239743_37454463	0/0	t0015	2572	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0016	2572	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0017	2572	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0018	2555	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0019	2572	1	0	0	0	1	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	t0020	2572	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NXF1_chr11_62787130_62810440	1/1	t0001	431	403	94	66	191	18	32	copy fasta	NXF1	chr11	62787130	62810440
NXF1_chr11_62787130_62810440	0/0	t0002	431	1	1	0	0	0	0	copy fasta	NXF1	chr11	62787130	62810440
NXF1_chr11_62787130_62810440	0/0	t0003	455	1	0	0	1	0	0	copy fasta	NXF1	chr11	62787130	62810440
NXF1_chr11_62787130_62810440	0/0	t0004	431	1	1	0	0	0	0	copy fasta	NXF1	chr11	62787130	62810440
NXF2B_chrX_102355395_102445008	0/0	t0001	521	53	8	7	34	1	3	copy fasta	NXF2B	chrX	102355395	102445008
NXF2B_chrX_102355395_102445008	0/0	t0002	521	1	1	0	0	0	0	copy fasta	NXF2B	chrX	102355395	102445008
NXF2_chrX_102242167_102331722	0/0	t0001	456	35	12	6	11	3	3	copy fasta	NXF2	chrX	102242167	102331722
NXF2_chrX_102242167_102331722	0/0	t0002	454	1	0	0	0	0	1	copy fasta	NXF2	chrX	102242167	102331722
NXF2_chrX_102242167_102331722	0/0	t0003	455	1	0	1	0	0	0	copy fasta	NXF2	chrX	102242167	102331722
NXF2_chrX_102242167_102331722	0/0	t0004	456	1	0	1	0	0	0	copy fasta	NXF2	chrX	102242167	102331722
NXF3_chrX_103070810_103098143	1/1	t0001	361	312	66	55	146	13	30	copy fasta	NXF3	chrX	103070810	103098143
NXF3_chrX_103070810_103098143	0/0	t0002	361	2	2	0	0	0	0	copy fasta	NXF3	chrX	103070810	103098143
NXNL1_chr19_17450425_17465926	1/1	t0001	280	347	78	59	162	10	36	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	t0002	280	42	4	8	17	4	9	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	t0003	280	16	11	1	0	0	4	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	t0004	280	1	0	0	1	0	0	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	t0005	280	1	1	0	0	0	0	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	t0006	280	1	0	0	0	0	1	copy fasta	NXNL1	chr19	17450425	17465926
NXNL2_chr9_88530178_88549973	1/1	t0001	684	150	43	38	43	6	18	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	t0002	684	113	1	12	82	2	16	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	t0003	684	26	26	0	0	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	t0004	684	26	19	2	5	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	t0005	684	6	0	0	6	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	t0006	684	5	4	1	0	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	t0007	684	2	2	0	0	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	t0008	684	2	0	0	2	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	t0009	684	1	1	0	0	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	t0010	684	1	1	0	0	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	t0011	684	1	1	0	0	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	t0012	684	1	1	0	0	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	t0013	684	1	1	0	0	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	t0014	684	1	0	1	0	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXN_chr17_794310_984776	1/1	t0001	1738	74	27	15	16	3	11	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0002	1738	56	2	6	34	1	13	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0003	1738	36	7	14	12	0	3	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0004	1738	13	6	1	6	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0005	1738	12	2	3	3	0	4	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0006	1738	10	0	6	2	1	1	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0007	1738	4	4	0	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0008	1738	4	2	0	0	0	2	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0009	1738	3	3	0	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0010	1738	2	0	0	1	0	1	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0011	1738	2	1	1	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0012	1738	2	2	0	0	0	0	copy fasta	NXN	chr17	794310	984776