JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NXN_chr17_794310_984776	0/0	t0013	1738	2	0	1	0	1	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0014	1738	2	0	1	1	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0015	1738	2	0	2	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0016	1738	1	0	0	1	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0017	1738	1	0	0	0	0	1	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0018	1738	1	0	0	1	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0019	1738	1	0	0	1	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0020	1738	1	0	0	1	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0021	1738	1	0	1	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0022	1738	1	0	0	1	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0023	1738	1	0	0	1	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0024	1738	1	1	0	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0025	1738	1	1	0	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0026	1738	1	1	0	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0027	1738	1	1	0	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0028	1738	1	0	0	0	0	1	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0029	1738	1	0	1	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0030	1738	1	0	0	1	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0031	1738	1	0	0	0	0	1	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0032	1738	1	1	0	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	t0033	1738	1	1	0	0	0	0	copy fasta	NXN	chr17	794310	984776
NXPE1_chr11_114513934_114564881	1/1	t0001	3329	115	12	26	57	6	12	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0002	3329	97	12	13	57	5	10	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0003	3409	43	19	14	0	1	9	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0004	3329	37	10	1	21	1	4	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0005	3409	9	6	3	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0006	3409	9	9	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0007	3409	6	5	1	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0008	3409	5	4	1	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0009	3329	4	2	2	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0010	3409	3	3	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0011	3329	3	1	1	0	1	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0012	3329	2	0	1	0	0	1	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0013	3329	2	0	0	2	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0014	3409	2	2	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0015	3409	2	2	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0016	3409	2	2	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0017	3329	2	2	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0018	3329	2	0	0	0	0	2	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0019	3329	1	0	0	1	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0020	3329	1	0	0	1	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0021	3329	1	0	0	1	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0022	3329	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0023	3329	1	0	1	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0024	3329	1	0	0	1	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0025	3409	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0026	3409	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0027	3409	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0028	3409	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0029	3329	1	0	0	0	0	1	copy fasta	NXPE1	chr11	114513934	114564881