JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NXPE1_chr11_114513934_114564881	0/0	t0030	3329	1	0	0	1	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0031	3329	1	0	1	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0032	3343	1	0	0	0	0	1	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	t0033	3329	1	0	1	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE2_chr11_114673527_114712069	1/1	t0001	189	423	92	72	201	14	42	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	t0002	189	3	1	2	0	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	t0003	189	1	0	0	1	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	t0004	189	1	1	0	0	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE3_chr3_101774211_101833231	0/0	t0001	6890	90	15	13	49	5	8	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0002	6889	66	10	16	27	3	10	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0003	6889	42	4	3	29	1	5	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0004	6889	24	2	0	22	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0005	6890	17	7	8	0	2	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0006	6889	15	0	2	13	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0007	6889	10	2	3	0	1	4	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0008	6890	7	4	1	0	0	2	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0009	6889	6	0	6	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0010	6890	5	5	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0011	6889	5	5	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0012	6889	5	0	3	1	1	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0013	6889	4	4	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0014	6890	4	4	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0015	6889	4	4	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0016	6890	4	4	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0017	6889	4	0	0	4	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0018	6890	3	0	0	2	0	1	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0019	6890	3	2	0	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0020	6890	3	3	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0021	6889	3	0	1	2	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0022	6889	3	3	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0023	6891	2	0	1	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0024	6890	2	0	2	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0025	6890	2	2	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0026	6890	2	2	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0027	6889	2	0	0	2	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0028	6889	2	0	0	2	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0029	6889	2	2	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0030	6888	2	0	0	2	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0031	6888	1	1	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0032	6889	1	0	0	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0033	6890	1	0	0	0	0	1	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0034	6889	1	0	0	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0035	6890	1	0	1	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	1/0	t0036	6889	1	0	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0037	6890	1	0	0	0	0	1	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0038	6889	1	0	0	0	0	1	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0039	6891	1	0	0	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0040	6890	1	0	0	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0041	6890	1	0	0	0	0	1	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0042	6889	1	0	0	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231