JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NXPE3_chr3_101774211_101833231	0/0	t0043	6890	1	1	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0044	6889	1	1	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0045	6889	1	0	0	0	0	1	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0046	6889	1	1	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0047	6889	1	0	0	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0048	6889	1	0	0	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0049	6889	1	1	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0050	6889	1	0	1	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0051	6888	1	0	0	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0052	6888	1	1	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0053	6889	1	0	0	0	0	1	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0054	6891	1	1	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0055	6890	1	1	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0056	6890	1	0	0	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0057	6890	1	0	1	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0058	6890	1	0	0	0	0	1	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0059	6889	1	0	1	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0060	6888	1	1	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0061	6889	1	0	0	0	0	1	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0062	6889	1	0	1	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0063	6889	1	1	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0064	6890	1	0	0	0	1	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0065	6890	1	0	0	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/1	t0066	6889	1	0	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	t0067	6889	1	0	0	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE4_chr11_114565591_114600786	1/1	t0001	553	352	46	59	202	10	33	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	t0002	553	57	30	16	0	1	10	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	t0003	553	9	7	2	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	t0004	553	4	4	0	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	t0005	553	4	3	1	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	t0006	553	3	3	0	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	t0007	553	1	0	0	0	0	1	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	t0008	553	1	0	0	0	1	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	t0009	553	1	1	0	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPH1_chr7_8428609_8757961	0/0	t0001	2450	128	48	23	43	4	10	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0002	2450	19	6	10	1	0	2	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0003	2450	16	9	1	5	0	1	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0004	2450	10	5	0	4	0	1	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0005	2450	9	8	1	0	0	0	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0006	2450	4	1	1	2	0	0	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0007	2450	4	0	0	4	0	0	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0008	2450	3	0	2	0	0	1	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0009	2450	2	2	0	0	0	0	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0010	2450	2	0	0	0	0	2	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0011	2450	1	0	0	1	0	0	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0012	2450	1	0	0	1	0	0	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0013	2450	1	0	1	0	0	0	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0014	2450	1	1	0	0	0	0	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0015	2450	1	0	0	1	0	0	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0016	2450	1	0	0	0	0	1	copy fasta	NXPH1	chr7	8428609	8757961