JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NXPH1_chr7_8428609_8757961	0/0	t0017	2450	1	0	1	0	0	0	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0018	2450	1	1	0	0	0	0	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0019	2450	1	1	0	0	0	0	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0020	2450	1	0	0	0	0	1	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	t0021	2450	1	0	0	0	0	1	copy fasta	NXPH1	chr7	8428609	8757961
NXPH2_chr2_138664157_138785390	1/0	t0001	1915	133	11	18	79	6	18	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	t0002	1915	108	39	21	39	2	7	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/1	t0003	1915	75	23	20	20	2	9	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	t0004	1915	16	0	6	7	1	2	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	t0005	1915	6	6	0	0	0	0	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	t0006	1915	4	0	0	4	0	0	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	t0007	1915	2	1	0	0	1	0	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	t0008	1915	1	1	0	0	0	0	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	t0009	1915	1	0	0	1	0	0	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	t0010	1915	1	1	0	0	0	0	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	t0011	1915	1	0	1	0	0	0	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	t0012	1915	1	1	0	0	0	0	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	t0013	1915	1	1	0	0	0	0	copy fasta	NXPH2	chr2	138664157	138785390
NXPH3_chr17_49570871_49588827	0/0	t0001	4877	269	59	44	139	5	22	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/1	t0002	4877	55	7	7	23	7	10	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	1/0	t0003	4877	33	7	16	0	4	5	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0004	4877	5	5	0	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0005	4877	3	2	1	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0006	4877	3	0	0	3	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0007	4877	3	0	0	3	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0008	4877	3	1	2	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0009	4877	3	1	2	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0010	4877	2	0	0	0	2	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0011	4877	2	0	1	0	0	1	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0012	4877	2	0	2	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0013	4878	2	2	0	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0014	4877	2	2	0	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0015	4877	2	0	0	2	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0016	4877	2	0	0	0	0	2	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0017	4878	2	1	0	0	0	1	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0018	4877	2	0	0	2	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0019	4877	2	2	0	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0020	4877	1	0	0	1	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0021	4877	1	1	0	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0022	4877	1	1	0	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0023	4877	1	1	0	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0024	4877	1	1	0	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0025	4877	1	1	0	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0026	4877	1	1	0	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0027	4877	1	0	0	1	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0028	4877	1	0	0	1	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0029	4877	1	0	0	0	0	1	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0030	4877	1	0	0	0	0	1	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0031	4877	1	0	1	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0032	4877	1	0	0	1	0	0	copy fasta	NXPH3	chr17	49570871	49588827