JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NXPH3_chr17_49570871_49588827	0/0	t0033	4877	1	0	0	1	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0034	4877	1	0	0	1	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0035	4877	1	0	1	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0036	4877	1	0	1	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0037	4877	1	0	0	1	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0038	4877	1	1	0	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0039	4878	1	1	0	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0040	4877	1	0	0	0	0	1	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0041	4877	1	0	1	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0042	4877	1	0	0	1	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0043	4971	1	0	1	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	t0044	4877	1	1	0	0	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH4_chr12_57211794_57231449	0/1	t0001	870	343	77	58	155	13	39	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	1/0	t0002	879	25	16	3	5	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	t0003	870	3	3	0	0	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	t0004	888	3	0	3	0	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	t0005	861	2	0	0	2	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	t0006	870	1	0	0	1	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	t0007	870	1	0	0	0	0	1	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	t0008	870	1	1	0	0	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	t0009	870	1	1	0	0	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	t0010	870	1	0	0	1	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	t0011	870	1	0	0	0	1	0	copy fasta	NXPH4	chr12	57211794	57231449
NXT1_chr20_23345791_23359771	1/1	t0001	640	340	94	67	123	14	40	copy fasta	NXT1	chr20	23345791	23359771
NXT1_chr20_23345791_23359771	0/0	t0002	638	69	1	9	57	0	2	copy fasta	NXT1	chr20	23345791	23359771
NXT1_chr20_23345791_23359771	0/0	t0003	640	22	1	0	21	0	0	copy fasta	NXT1	chr20	23345791	23359771
NXT1_chr20_23345791_23359771	0/0	t0004	640	2	0	0	2	0	0	copy fasta	NXT1	chr20	23345791	23359771
NXT1_chr20_23345791_23359771	0/0	t0005	640	1	0	0	1	0	0	copy fasta	NXT1	chr20	23345791	23359771
NXT2_chrX_109531844_109549698	1/1	t0001	2174	180	25	40	89	4	20	copy fasta	NXT2	chrX	109531844	109549698
NXT2_chrX_109531844_109549698	0/0	t0002	2174	56	38	0	18	0	0	copy fasta	NXT2	chrX	109531844	109549698
NXT2_chrX_109531844_109549698	0/0	t0003	2174	43	3	7	20	3	10	copy fasta	NXT2	chrX	109531844	109549698
NXT2_chrX_109531844_109549698	0/0	t0004	2174	8	1	3	0	2	2	copy fasta	NXT2	chrX	109531844	109549698
NXT2_chrX_109531844_109549698	0/0	t0005	2174	2	2	0	0	0	0	copy fasta	NXT2	chrX	109531844	109549698
NXT2_chrX_109531844_109549698	0/0	t0006	2174	1	1	0	0	0	0	copy fasta	NXT2	chrX	109531844	109549698
NXT2_chrX_109531844_109549698	0/0	t0007	2174	1	0	0	0	0	1	copy fasta	NXT2	chrX	109531844	109549698
NXT2_chrX_109531844_109549698	0/0	t0008	2174	1	0	0	0	0	1	copy fasta	NXT2	chrX	109531844	109549698
NXT2_chrX_109531844_109549698	0/0	t0009	2174	1	0	0	1	0	0	copy fasta	NXT2	chrX	109531844	109549698
NXT2_chrX_109531844_109549698	0/0	t0010	2174	1	0	1	0	0	0	copy fasta	NXT2	chrX	109531844	109549698
NYAP1_chr7_100478927_100499802	0/1	t0001	1059	190	42	29	91	8	19	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0002	1059	71	6	8	42	3	12	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0003	1060	35	8	8	12	0	7	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0004	1060	32	20	3	1	5	3	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0005	1060	9	0	2	6	0	1	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	1/0	t0006	1059	7	0	6	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0007	1061	6	2	3	0	0	1	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0008	1060	2	0	0	0	0	2	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0009	1059	2	0	2	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0010	1059	2	2	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0011	1059	1	1	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0012	1059	1	0	0	0	0	1	copy fasta	NYAP1	chr7	100478927	100499802