Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARSB_chr5_78772209_78990310	0/0	t0059	3250	1	0	0	1	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0060	3254	1	0	0	1	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0061	3254	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0062	3251	1	0	0	0	0	1	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0063	3253	1	0	1	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0064	3252	1	0	1	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0065	3251	1	0	0	1	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0066	3252	1	0	1	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0067	3252	1	0	1	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0068	3253	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0069	3250	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0070	3251	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0071	3251	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0072	3253	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0073	3254	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0074	3252	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0075	3251	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0076	3252	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	t0077	3251	1	0	1	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSD_chrX_2898972_2934339	1/0	t0001	3364	121	31	29	37	3	20	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0002	3366	36	1	0	35	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0003	3364	35	0	7	23	0	5	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0004	3357	23	3	8	6	4	2	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0005	3366	23	11	1	9	1	1	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0006	3363	13	4	2	3	3	1	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0007	3365	7	0	3	3	0	1	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0008	3363	7	7	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0009	3357	7	0	0	7	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0010	3363	5	0	2	3	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0011	3365	5	0	0	5	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0012	3363	4	0	1	2	1	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0013	3368	4	4	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0014	3364	3	3	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/1	t0015	3357	3	0	1	0	1	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0016	3363	3	1	1	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0017	3364	3	0	0	3	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0018	3363	2	1	1	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0019	3357	2	2	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0020	3362	2	1	1	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0021	3367	2	0	0	2	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0022	3365	2	1	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0023	3365	2	0	0	2	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0024	3364	2	1	1	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0025	3360	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0026	3362	1	1	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0027	3361	1	0	1	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0028	3362	1	1	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0029	3364	1	0	0	0	0	1	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0030	3364	1	1	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0031	3363	1	1	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339