JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NYAP1_chr7_100478927_100499802	0/0	t0013	1060	1	0	0	1	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0014	1060	1	1	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0015	1060	1	0	1	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0016	1060	1	1	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0017	1060	1	1	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0018	1059	1	0	0	0	1	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0019	1059	1	0	0	1	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	t0020	1059	1	0	0	0	1	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP2_chr2_225394710_225708654	0/1	t0001	6154	39	10	6	15	2	5	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	1/0	t0002	6157	28	3	8	9	0	7	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0003	6156	23	6	7	9	1	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0004	6154	17	15	2	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0005	6159	10	1	0	9	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0006	6154	10	0	1	5	2	2	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0007	6157	4	0	0	2	0	2	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0008	6154	4	4	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0009	6154	4	4	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0010	6154	4	0	0	4	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0011	6157	3	2	1	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0012	6159	3	0	0	3	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0013	6157	2	0	2	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0014	6157	2	2	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0015	6157	2	2	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0016	6157	2	1	1	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0017	6154	2	2	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0018	6152	2	2	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0019	6154	2	0	1	0	0	1	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0020	6154	2	2	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0021	6154	2	2	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0022	6154	1	0	1	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0023	6157	1	1	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0024	6157	1	1	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0025	6157	1	0	0	1	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0026	6157	1	1	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0027	6157	1	0	0	1	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0028	6157	1	0	1	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0029	6157	1	0	0	0	0	1	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0030	6157	1	1	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0031	6154	1	1	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0032	6154	1	0	1	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0033	6154	1	1	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0034	6154	1	1	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0035	6154	1	0	1	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0036	6154	1	1	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0037	6154	1	0	0	0	1	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0038	6154	1	0	0	1	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0039	6154	1	1	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0040	6154	1	1	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0041	6154	1	0	1	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0042	6154	1	1	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654