JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NYAP2_chr2_225394710_225708654	0/0	t0043	6154	1	0	0	1	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0044	6154	1	1	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0045	6156	1	0	0	1	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	t0046	6154	1	0	0	1	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYNRIN_chr14_24394003_24424283	0/1	t0001	1939	98	23	35	9	11	19	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0002	1939	77	19	29	21	1	7	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0003	1939	60	0	5	45	1	9	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0004	1939	36	0	4	32	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0005	1939	24	0	0	24	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0006	1939	22	8	1	10	0	3	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0007	1939	17	0	0	15	0	2	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0008	1939	13	13	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0009	1938	12	1	1	4	2	4	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0010	1939	9	0	0	8	0	1	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0011	1939	8	0	0	6	0	2	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0012	1939	8	8	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0013	1939	7	0	0	6	0	1	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0014	1938	4	0	0	3	0	1	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0015	1939	4	0	0	4	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	1/0	t0016	1939	4	3	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0017	1939	4	4	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0018	1939	3	3	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0019	1939	2	0	0	2	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0020	1938	2	0	0	2	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0021	1939	2	2	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0022	1939	2	0	0	2	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0023	1939	2	2	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0024	1939	2	0	0	2	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0025	1939	2	2	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0026	1939	2	0	0	2	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0027	1939	2	0	0	2	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0028	1939	1	1	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0029	1939	1	1	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0030	1939	1	1	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0031	1938	1	0	0	0	1	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0032	1939	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0033	1939	1	1	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0034	1939	1	0	0	0	0	1	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0035	1939	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0036	1939	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0037	1939	1	1	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0038	1939	1	1	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0039	1939	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0040	1939	1	1	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0041	1939	1	0	1	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0042	1939	1	1	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0043	1939	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0044	1938	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0045	1938	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0046	1939	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283