JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NYNRIN_chr14_24394003_24424283	0/0	t0047	1939	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0048	1939	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	t0049	1939	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYX_chrX_41442343_41480652	0/1	t0001	984	136	24	31	57	4	19	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	1/0	t0002	984	135	32	23	64	7	8	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0003	984	9	9	0	0	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0004	984	6	6	0	0	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0005	984	3	3	0	0	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0006	983	3	1	0	2	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0007	984	3	0	0	3	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0008	984	2	1	1	0	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0009	983	2	1	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0010	984	2	0	2	0	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0011	983	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0012	986	1	0	0	0	0	1	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0013	1004	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0014	984	1	1	0	0	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0015	985	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0016	982	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0017	985	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0018	985	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	t0019	984	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
OAF_chr11_120206032_120235334	1/0	t0001	1441	203	37	11	133	0	21	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/1	t0002	1441	175	53	67	19	10	25	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	t0003	1441	6	0	0	6	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	t0004	1441	4	3	1	0	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	t0005	1441	2	2	0	0	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	t0006	1441	1	1	0	0	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	t0007	1441	1	1	0	0	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	t0008	1455	1	0	0	1	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	t0009	1441	1	1	0	0	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	t0010	1441	1	0	0	1	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	t0011	1441	1	0	1	0	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	t0012	1441	1	0	1	0	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	t0013	1441	1	0	0	1	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	t0014	1441	1	0	1	0	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	t0015	1429	1	0	0	1	0	0	copy fasta	OAF	chr11	120206032	120235334
OARD1_chr6_41059772_41077356	1/1	t0001	2726	203	34	42	100	7	18	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0002	2726	79	2	15	49	3	10	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0003	2726	37	34	1	0	0	2	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0004	2726	6	6	0	0	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0005	2726	5	0	3	0	0	2	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0006	2727	5	5	0	0	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0007	2725	4	4	0	0	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0008	2726	3	3	0	0	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0009	2726	3	0	0	1	0	2	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0010	2726	2	0	0	0	0	2	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0011	2727	2	2	0	0	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0012	2726	2	0	0	2	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0013	2726	2	0	0	0	0	2	copy fasta	OARD1	chr6	41059772	41077356