JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OARD1_chr6_41059772_41077356	0/0	t0014	2726	1	1	0	0	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0015	2726	1	0	1	0	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0016	2726	1	0	0	0	0	1	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0017	2726	1	0	0	0	0	1	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0018	2726	1	0	0	1	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0019	2726	1	0	0	1	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0020	2725	1	0	0	1	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0021	2726	1	0	1	0	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0022	2726	1	0	0	1	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0023	2726	1	0	0	1	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0024	2727	1	0	0	1	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0025	2726	1	0	0	1	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0026	2726	1	1	0	0	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0027	2726	1	1	0	0	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0028	2726	1	0	1	0	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0029	2725	1	0	0	1	0	0	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	t0030	2726	1	1	0	0	0	0	copy fasta	OARD1	chr6	41059772	41077356
OAS1_chr12_112901962_112924903	0/1	t0001	429	362	85	65	172	11	28	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	1/0	t0002	429	68	0	8	40	3	16	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	t0003	429	4	4	0	0	0	0	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	t0004	429	2	1	1	0	0	0	copy fasta	OAS1	chr12	112901962	112924903
OAS2_chr12_112973519_113016723	0/0	t0001	2558	141	10	32	76	5	18	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0002	2556	92	3	14	62	2	11	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0003	2558	37	31	5	0	0	1	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	1/1	t0004	2559	19	1	7	2	5	2	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0005	2558	12	7	2	0	1	2	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0006	2556	11	0	0	11	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0007	2559	9	0	5	0	0	4	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0008	2557	8	0	0	6	0	2	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0009	2558	8	7	1	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0010	2557	7	7	0	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0011	2557	7	6	1	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0012	2557	7	4	0	1	0	2	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0013	2557	4	3	1	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0014	2558	3	3	0	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0015	2557	2	2	0	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0016	2556	1	0	0	1	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0017	2556	1	0	0	0	0	1	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0018	2556	1	0	0	1	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0019	2575	1	0	0	1	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0020	2558	1	1	0	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0021	2558	1	1	0	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0022	2558	1	0	0	0	0	1	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0023	2558	1	1	0	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0024	2558	1	1	0	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0025	2558	1	1	0	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0026	2558	1	0	0	0	1	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0027	2556	1	0	0	1	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	t0028	2558	1	1	0	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS3_chr12_112933474_112978251	0/1	t0001	3326	59	9	13	22	4	10	copy fasta	OAS3	chr12	112933474	112978251