JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OAS3_chr12_112933474_112978251	0/0	t0002	3336	48	5	12	23	0	8	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	1/0	t0003	3336	35	0	8	14	2	10	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0004	3344	29	1	8	15	2	3	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0005	3326	27	0	0	27	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0006	3330	20	0	12	8	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0007	3334	20	18	2	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0008	3334	17	0	0	16	0	1	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0009	3336	12	0	0	12	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0010	3342	9	8	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0011	3342	7	4	0	3	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0012	3342	7	6	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0013	3338	5	1	0	2	0	2	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0014	3340	4	3	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0015	3340	4	4	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0016	3346	3	0	1	2	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0017	3344	3	0	3	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0018	3336	3	0	0	3	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0019	3340	3	3	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0020	3342	3	2	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0021	3326	2	0	0	2	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0022	3334	2	0	0	0	0	2	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0023	3338	2	0	0	0	0	2	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0024	3340	2	2	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0025	3340	2	0	0	2	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0026	3332	2	1	0	0	0	1	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0027	3336	2	0	2	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0028	3330	2	2	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0029	3326	2	1	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0030	3346	2	2	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0031	3344	2	2	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0032	3338	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0033	3330	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0034	3340	1	0	0	0	0	1	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0035	3332	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0036	3336	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0037	3336	1	0	0	0	0	1	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0038	3326	1	0	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0039	3334	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0040	3326	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0041	3342	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0042	3348	1	0	0	0	0	1	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0043	3336	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0044	3346	1	0	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0045	3342	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0046	3336	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0047	3340	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0048	3342	1	0	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0049	3338	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0050	3348	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0051	3346	1	0	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251