JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OAS3_chr12_112933474_112978251	0/0	t0052	3344	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0053	3344	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0054	3342	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0055	3340	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0056	3336	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0057	3332	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0058	3344	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0059	3332	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0060	3342	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	t0061	3346	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OASL_chr12_121014111_121044246	0/1	t0001	1726	133	6	37	71	6	12	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	1/0	t0002	1726	80	40	4	24	2	9	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0003	1726	55	12	3	34	0	6	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0004	1726	40	0	7	21	5	7	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0005	1725	26	11	10	2	2	1	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0006	1726	17	3	1	9	3	1	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0007	1725	8	5	2	0	0	1	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0008	1725	6	0	5	0	0	1	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0009	1726	6	6	0	0	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0010	1726	4	4	0	0	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0011	1725	3	3	0	0	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0012	1726	3	1	1	1	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0013	1726	1	1	0	0	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0014	1726	1	0	0	1	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0015	1726	1	1	0	0	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0016	1726	1	1	0	0	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0017	1726	1	1	0	0	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0018	1726	1	1	0	0	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0019	1726	1	0	0	0	0	1	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0020	1726	1	0	0	1	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	t0021	1726	1	0	0	0	0	1	copy fasta	OASL	chr12	121014111	121044246
OAT_chr10_124392303_124423923	1/1	t0001	720	311	63	58	132	13	43	copy fasta	OAT	chr10	124392303	124423923
OAT_chr10_124392303_124423923	0/0	t0002	720	46	27	2	11	1	5	copy fasta	OAT	chr10	124392303	124423923
OAT_chr10_124392303_124423923	0/0	t0003	720	16	1	5	7	1	2	copy fasta	OAT	chr10	124392303	124423923
OAT_chr10_124392303_124423923	0/0	t0004	720	3	0	2	0	1	0	copy fasta	OAT	chr10	124392303	124423923
OAT_chr10_124392303_124423923	0/0	t0005	720	1	1	0	0	0	0	copy fasta	OAT	chr10	124392303	124423923
OAT_chr10_124392303_124423923	0/0	t0006	720	1	0	0	1	0	0	copy fasta	OAT	chr10	124392303	124423923
OAT_chr10_124392303_124423923	0/0	t0007	720	1	1	0	0	0	0	copy fasta	OAT	chr10	124392303	124423923
OAT_chr10_124392303_124423923	0/0	t0008	720	1	0	1	0	0	0	copy fasta	OAT	chr10	124392303	124423923
OAT_chr10_124392303_124423923	0/0	t0009	720	1	1	0	0	0	0	copy fasta	OAT	chr10	124392303	124423923
OAT_chr10_124392303_124423923	0/0	t0010	720	1	0	0	1	0	0	copy fasta	OAT	chr10	124392303	124423923
OBI1_chr13_78609289_78664155	1/1	t0001	1327	164	56	31	51	6	18	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	t0002	1327	121	32	23	46	4	16	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	t0003	1327	5	4	1	0	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	t0004	1327	2	1	1	0	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	t0005	1327	2	2	0	0	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	t0006	1327	1	0	0	1	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	t0007	1327	1	1	0	0	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBP2A_chr9_135541126_135554969	0/0	t0001	189	293	41	56	143	13	40	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	t0002	190	112	52	17	34	4	5	copy fasta	OBP2A	chr9	135541126	135554969