JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OCIAD2_chr4_48880019_48911774	0/0	t0004	645	4	4	0	0	0	0	copy fasta	OCIAD2	chr4	48880019	48911774
OCIAD2_chr4_48880019_48911774	0/0	t0005	645	1	1	0	0	0	0	copy fasta	OCIAD2	chr4	48880019	48911774
OCIAD2_chr4_48880019_48911774	0/0	t0006	649	1	1	0	0	0	0	copy fasta	OCIAD2	chr4	48880019	48911774
OCLN_chr5_69487790_69563104	0/0	t0001	4612	94	9	15	57	1	12	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/1	t0002	4610	60	31	11	6	1	10	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	1/0	t0003	4613	51	10	14	25	0	1	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0004	4614	8	4	4	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0005	4615	8	7	1	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0006	4610	5	0	1	4	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0007	4611	5	0	4	0	1	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0008	4612	5	0	1	3	1	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0009	4614	5	4	1	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0010	4612	5	0	0	5	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0011	4610	4	0	4	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0012	4611	3	1	0	1	0	1	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0013	4612	3	0	0	3	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0014	4616	3	3	0	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0015	4616	3	3	0	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0016	4612	2	0	0	0	0	2	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0017	4613	2	0	0	1	0	1	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0018	4616	2	1	1	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0019	4613	2	0	0	2	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0020	4612	1	0	1	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0021	4612	1	0	0	1	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0022	4611	1	0	0	1	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0023	4612	1	0	0	1	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0024	4610	1	0	0	1	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0025	4612	1	0	0	0	0	1	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0026	4612	1	0	1	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0027	4612	1	0	1	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0028	4612	1	0	0	1	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0029	4610	1	0	1	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0030	4611	1	0	0	1	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0031	4612	1	0	1	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0032	4613	1	0	0	1	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0033	4613	1	1	0	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0034	4613	1	0	0	1	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0035	4614	1	0	0	1	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0036	4616	1	1	0	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0037	4609	1	0	1	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0038	4611	1	0	1	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	t0039	4616	1	1	0	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCM2_chr7_97979687_97995196	1/1	t0001	364	395	81	74	180	17	41	copy fasta	OCM2	chr7	97979687	97995196
OCM2_chr7_97979687_97995196	0/0	t0002	364	36	0	2	30	1	3	copy fasta	OCM2	chr7	97979687	97995196
OCM2_chr7_97979687_97995196	0/0	t0003	364	14	14	0	0	0	0	copy fasta	OCM2	chr7	97979687	97995196
OCM2_chr7_97979687_97995196	0/0	t0004	364	3	3	0	0	0	0	copy fasta	OCM2	chr7	97979687	97995196
OCM2_chr7_97979687_97995196	0/0	t0005	364	2	2	0	0	0	0	copy fasta	OCM2	chr7	97979687	97995196
OCM_chr7_5875798_5891363	1/1	t0001	367	431	80	81	208	14	46	copy fasta	OCM	chr7	5875798	5891363
OCM_chr7_5875798_5891363	0/0	t0002	367	9	8	1	0	0	0	copy fasta	OCM	chr7	5875798	5891363
OCM_chr7_5875798_5891363	0/0	t0003	367	4	4	0	0	0	0	copy fasta	OCM	chr7	5875798	5891363