JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OCM_chr7_5875798_5891363	0/0	t0004	367	4	4	0	0	0	0	copy fasta	OCM	chr7	5875798	5891363
OCM_chr7_5875798_5891363	0/0	t0005	367	1	0	0	1	0	0	copy fasta	OCM	chr7	5875798	5891363
OCM_chr7_5875798_5891363	0/0	t0006	367	1	0	0	1	0	0	copy fasta	OCM	chr7	5875798	5891363
OCRL_chrX_129535259_129597556	0/0	t0001	2468	96	9	2	76	0	9	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	1/1	t0002	2468	95	38	21	19	4	11	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0003	2468	58	6	4	41	1	6	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0004	2468	5	4	1	0	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0005	2468	4	4	0	0	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0006	2468	3	3	0	0	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0007	2468	3	3	0	0	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0008	2467	2	0	1	0	1	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0009	2469	1	0	0	1	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0010	2468	1	1	0	0	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0011	2468	1	0	1	0	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0012	2468	1	1	0	0	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0013	2468	1	0	1	0	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0014	2468	1	1	0	0	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0015	2464	1	1	0	0	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0016	2468	1	1	0	0	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0017	2468	1	0	1	0	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0018	2468	1	0	0	0	1	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0019	2468	1	0	0	1	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	t0020	2469	1	0	0	1	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCSTAMP_chr20_46535946_46555654	1/1	t0001	423	344	44	65	183	10	40	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	t0002	423	39	38	1	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	t0003	423	35	10	4	12	2	7	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	t0004	423	13	0	0	13	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	t0005	423	5	5	0	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	t0006	423	2	0	0	0	0	2	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	t0007	423	1	0	0	0	0	1	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	t0008	423	1	1	0	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	t0009	423	1	0	0	1	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	t0010	423	1	0	0	1	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
ODAD1_chr19_48291462_48326971	1/0	t0001	872	158	35	27	80	2	13	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	t0002	872	137	33	36	51	4	13	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/1	t0003	872	74	12	9	34	5	13	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	t0004	872	8	8	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	t0005	872	6	3	1	0	1	1	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	t0006	872	4	2	0	0	0	2	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	t0007	872	2	1	1	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	t0008	872	2	2	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	t0009	872	1	0	1	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	t0010	872	1	0	1	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	t0011	872	1	0	0	1	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	t0012	872	1	0	0	0	0	1	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	t0013	872	1	1	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	t0014	872	1	0	0	0	0	1	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	t0015	872	1	1	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD2_chr10_27807168_28004079	1/0	t0001	469	145	41	24	68	4	7	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/1	t0002	467	142	37	31	45	10	18	copy fasta	ODAD2	chr10	27807168	28004079