JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ODAD2_chr10_27807168_28004079	0/0	t0003	467	9	1	7	0	0	1	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	t0004	469	5	3	2	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	t0005	469	2	2	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	t0006	469	1	0	0	1	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD3_chr19_11415605_11440121	1/1	t0001	336	395	89	72	176	18	38	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	t0002	336	2	2	0	0	0	0	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	t0003	336	1	1	0	0	0	0	copy fasta	ODAD3	chr19	11415605	11440121
ODAD4_chr17_41925617_41971503	1/0	t0001	1128	240	72	50	77	12	28	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/1	t0002	1126	99	9	24	47	6	12	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	t0003	1128	1	1	0	0	0	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAM_chr4_70190725_70209576	1/0	t0001	516	313	76	58	139	7	32	copy fasta	ODAM	chr4	70190725	70209576
ODAM_chr4_70190725_70209576	0/1	t0002	516	121	15	12	72	5	16	copy fasta	ODAM	chr4	70190725	70209576
ODAM_chr4_70190725_70209576	0/0	t0003	516	6	6	0	0	0	0	copy fasta	ODAM	chr4	70190725	70209576
ODAM_chr4_70190725_70209576	0/0	t0004	516	3	0	0	3	0	0	copy fasta	ODAM	chr4	70190725	70209576
ODAM_chr4_70190725_70209576	0/0	t0005	516	2	0	2	0	0	0	copy fasta	ODAM	chr4	70190725	70209576
ODAM_chr4_70190725_70209576	0/0	t0006	516	1	1	0	0	0	0	copy fasta	ODAM	chr4	70190725	70209576
ODAPH_chr4_75551066_75569817	1/1	t0001	396	447	92	78	211	18	46	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	t0002	396	4	4	0	0	0	0	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	t0003	396	1	0	0	1	0	0	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	t0004	396	1	0	0	1	0	0	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	t0005	396	1	0	0	1	0	0	copy fasta	ODAPH	chr4	75551066	75569817
ODC1_chr2_10434968_10453327	1/0	t0001	1091	202	54	54	51	7	35	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0002	1091	146	25	8	105	2	6	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0003	1091	48	3	7	31	2	5	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0004	1091	14	12	2	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0005	1091	7	0	5	2	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0006	1085	3	0	0	3	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0007	1091	3	0	3	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0008	1094	3	2	1	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0009	1091	2	2	0	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0010	1078	1	0	0	1	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0011	1091	1	0	1	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0012	1091	1	0	0	1	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0013	1091	1	1	0	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/1	t0014	1091	1	0	0	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0015	1091	1	0	0	0	1	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0016	1091	1	1	0	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0017	1091	1	0	0	1	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0018	1091	1	0	0	1	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	t0019	1091	1	0	1	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODF1_chr8_102546589_102566018	1/0	t0001	274	255	45	35	135	10	29	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/1	t0002	274	203	55	40	81	5	21	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	t0003	274	1	0	0	0	1	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	t0004	274	1	0	1	0	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF2L_chr1_86341837_86401323	1/1	t0001	2264	223	62	48	81	9	21	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	t0002	2264	92	3	7	72	2	8	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	t0003	2264	38	0	1	34	0	3	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	t0004	2264	16	8	8	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	t0005	2264	13	0	7	0	0	6	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	t0006	2264	5	5	0	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323