Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARSD_chrX_2898972_2934339	0/0	t0032	3364	1	0	0	0	0	1	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0033	3358	1	1	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0034	3357	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0035	3364	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0036	3363	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0037	3367	1	1	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0038	3367	1	1	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0039	3366	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0040	3353	1	0	1	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0041	3362	1	1	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0042	3364	1	1	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0043	3364	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0044	3365	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0045	3364	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0046	3364	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0047	3362	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0048	3365	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0049	3365	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0050	3367	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0051	3365	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	t0052	3367	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSF_chrX_3036471_3117727	1/1	t0001	393	185	39	33	75	11	25	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	t0002	364	2	2	0	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	t0003	393	2	2	0	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	t0004	396	1	0	0	1	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	t0005	393	1	0	0	1	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	t0006	393	1	0	0	1	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	t0007	443	1	0	0	0	0	1	copy fasta	ARSF	chrX	3036471	3117727
ARSG_chr17_68286495_68425814	0/0	t0001	977	207	71	39	76	4	17	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	1/1	t0002	977	91	7	20	35	8	19	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	t0003	977	3	3	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	t0004	977	1	0	1	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	t0005	977	1	1	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	t0006	977	1	0	0	1	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSH_chrX_3001546_3039111	0/0	t0001	794	197	23	41	100	10	23	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	1/1	t0002	794	34	16	7	0	3	6	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	t0003	794	4	4	0	0	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	t0004	794	3	0	3	0	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	t0005	794	3	2	1	0	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	t0006	794	2	2	0	0	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	t0007	793	1	0	0	1	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	t0008	793	1	0	0	0	0	1	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	t0009	795	1	0	0	1	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	t0010	794	1	0	0	0	0	1	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	t0011	798	1	0	0	1	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSI_chr5_150291343_150307905	0/0	t0001	1404	281	54	50	138	11	28	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	1/0	t0002	1404	78	16	22	28	2	9	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0003	1404	21	0	2	16	1	2	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0004	1404	19	1	0	17	0	1	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0005	1404	14	4	0	7	0	3	copy fasta	ARSI	chr5	150291343	150307905