JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ODF2L_chr1_86341837_86401323	0/0	t0007	2264	4	4	0	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	t0008	2264	3	0	0	3	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	t0009	2264	3	3	0	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	t0010	2264	2	0	0	2	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	t0011	2264	2	0	1	0	1	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	t0012	2264	2	2	0	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	t0013	2264	1	0	0	1	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	t0014	2264	1	0	0	1	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	t0015	2253	1	1	0	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2_chr9_128451006_128506292	1/0	t0001	1124	171	50	18	85	1	16	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/1	t0002	1125	144	20	30	70	6	17	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	t0003	1124	13	12	1	0	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	t0004	1124	10	0	3	0	5	2	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	t0005	1125	3	0	0	3	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	t0006	1124	2	2	0	0	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	t0007	1124	1	0	0	0	0	1	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	t0008	1124	1	1	0	0	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	t0009	1124	1	1	0	0	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF3B_chr22_50525426_50537498	1/1	t0001	111	391	84	73	170	16	46	copy fasta	ODF3B	chr22	50525426	50537498
ODF3B_chr22_50525426_50537498	0/0	t0002	111	12	11	1	0	0	0	copy fasta	ODF3B	chr22	50525426	50537498
ODF3B_chr22_50525426_50537498	0/0	t0003	111	3	3	0	0	0	0	copy fasta	ODF3B	chr22	50525426	50537498
ODF3L1_chr15_75719041_75732688	1/1	t0001	308	382	88	76	162	16	38	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	t0002	308	2	0	2	0	0	0	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	t0003	308	1	1	0	0	0	0	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	t0004	308	1	1	0	0	0	0	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L2_chr19_458361_479983	0/1	t0001	719	179	14	42	100	4	18	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	t0002	719	115	49	6	47	0	13	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	1/0	t0003	720	21	8	8	0	2	2	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	t0004	720	5	5	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	t0005	719	1	0	0	1	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	t0006	719	1	1	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	t0007	719	1	1	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	t0008	719	1	0	0	0	0	1	copy fasta	ODF3L2	chr19	458361	479983
ODF3_chr11_191761_205258	1/0	t0001	520	334	81	57	144	12	39	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/1	t0002	520	25	4	14	0	4	2	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	t0003	520	23	0	3	17	0	3	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	t0004	520	2	2	0	0	0	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	t0005	520	2	2	0	0	0	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	t0006	520	1	1	0	0	0	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	t0007	520	1	0	0	1	0	0	copy fasta	ODF3	chr11	191761	205258
ODF4_chr17_8334840_8351046	1/1	t0001	407	425	93	67	204	15	44	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	t0002	407	3	3	0	0	0	0	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	t0003	407	3	0	2	0	1	0	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	t0004	407	1	0	1	0	0	0	copy fasta	ODF4	chr17	8334840	8351046
ODR4_chr1_186370838_186426375	0/1	t0001	2456	230	40	35	121	7	26	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	1/0	t0002	2456	154	30	31	74	7	11	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	t0003	2456	5	5	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	t0004	2453	4	0	0	4	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	t0005	2452	3	3	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	t0006	2456	2	2	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375