JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ODR4_chr1_186370838_186426375	0/0	t0007	2456	2	2	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	t0008	2456	1	0	1	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	t0009	2456	1	0	1	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	t0010	2456	1	1	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	t0011	2456	1	1	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	t0012	2453	1	1	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	t0013	2456	1	1	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	t0014	2456	1	0	0	0	0	1	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	t0015	2456	1	0	0	1	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	t0016	2456	1	1	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	t0017	2456	1	1	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
OFD1_chrX_13729748_13774357	1/1	t0001	574	190	44	30	94	10	10	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	t0002	574	130	18	27	68	1	16	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	t0003	574	6	5	1	0	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	t0004	574	1	1	0	0	0	0	copy fasta	OFD1	chrX	13729748	13774357
OGA_chr10_101779450_101823444	0/1	t0001	2424	320	75	60	141	13	30	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	t0002	2424	4	0	0	4	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	t0003	2424	4	4	0	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	1/0	t0004	2424	3	2	0	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	t0005	2424	2	0	1	0	1	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	t0006	2424	2	1	1	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	t0007	2424	1	1	0	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	t0008	2424	1	1	0	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	t0009	2424	1	0	1	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	t0010	2424	1	0	0	1	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	t0011	2424	1	0	0	0	0	1	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	t0012	2424	1	0	1	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	t0013	2424	1	1	0	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	t0014	2424	1	1	0	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	t0015	2424	1	0	0	1	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	t0016	2424	1	0	0	1	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	t0017	2424	1	0	0	0	0	1	copy fasta	OGA	chr10	101779450	101823444
OGDHL_chr10_49729641_49767323	1/0	t0001	673	147	61	36	26	4	19	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/1	t0002	673	117	4	29	65	7	11	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	t0003	673	31	22	4	0	1	4	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	t0004	673	8	0	1	7	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	t0005	673	3	0	2	0	0	1	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	t0006	673	3	2	0	1	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	t0007	673	2	0	0	2	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	t0008	673	2	0	0	0	2	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	t0009	673	1	0	0	0	0	1	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	t0010	673	1	0	0	1	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	t0011	673	1	1	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDH_chr7_44601627_44714066	0/1	t0001	1123	129	46	10	60	2	10	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	t0002	1122	121	23	22	64	7	5	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	t0003	1122	16	14	0	2	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	1/0	t0004	1122	8	0	4	0	1	2	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	t0005	1121	8	0	1	3	1	3	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	t0006	1123	5	1	0	4	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	t0007	1122	5	0	0	0	4	1	copy fasta	OGDH	chr7	44601627	44714066