JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OGDH_chr7_44601627_44714066	0/0	t0008	1121	4	0	2	0	1	1	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	t0009	1123	2	2	0	0	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	t0010	1123	2	0	0	2	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	t0011	1122	1	1	0	0	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	t0012	1123	1	1	0	0	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	t0013	1122	1	1	0	0	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	t0014	1123	1	1	0	0	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	t0015	1122	1	0	0	1	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	t0016	1122	1	0	1	0	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGFOD1_chr16_56446554_56484104	1/0	t0001	2959	108	1	25	62	7	12	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0002	2959	92	38	10	30	4	10	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0003	2960	59	17	10	32	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0004	2959	39	6	9	13	3	8	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/1	t0005	2960	35	0	7	23	0	4	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0006	2960	21	0	0	20	0	1	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0007	2960	15	1	0	12	0	2	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0008	2960	11	11	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0009	2961	7	0	1	1	0	5	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0010	2960	7	0	0	4	0	3	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0011	2959	6	6	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0012	2961	3	3	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0013	2959	3	0	0	3	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0014	2959	2	2	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0015	2959	1	0	0	0	0	1	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0016	2959	1	0	0	1	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0017	2959	1	0	0	1	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0018	2959	1	0	0	1	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0019	2961	1	0	1	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0020	2960	1	0	0	1	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0021	2960	1	0	0	1	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0022	2960	1	1	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0023	2960	1	1	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0024	2947	1	0	1	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0025	2959	1	0	1	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0026	2959	1	0	0	1	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0027	2959	1	0	0	1	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0028	2959	1	1	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0029	2959	1	1	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0030	2959	1	0	1	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0031	2959	1	0	0	1	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0032	2959	1	1	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0033	2958	1	0	0	1	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0034	2959	1	1	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0035	2959	1	0	0	1	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	t0036	2959	1	1	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD2_chr12_122970244_122985042	1/1	t0001	705	178	64	25	65	3	19	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	t0002	705	163	2	43	88	7	23	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	t0003	705	22	22	0	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	t0004	705	1	0	0	1	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	t0005	705	1	0	0	1	0	0	copy fasta	OGFOD2	chr12	122970244	122985042