JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OGFOD2_chr12_122970244_122985042	0/0	t0006	705	1	0	0	1	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD3_chr17_82384210_82423586	1/0	t0001	3290	139	27	22	73	4	12	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0002	3290	100	11	23	48	3	15	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0003	3290	30	3	17	0	2	8	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/1	t0004	3290	8	0	1	0	2	4	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0005	3290	6	5	1	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0006	3290	6	6	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0007	3290	6	6	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0008	3247	5	5	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0009	3247	4	4	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0010	3290	4	4	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0011	3247	4	4	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0012	3290	3	0	0	3	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0013	3290	2	2	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0014	3290	2	2	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0015	3290	2	1	1	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0016	3290	1	0	1	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0017	3290	1	0	0	0	1	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0018	3290	1	1	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0019	3290	1	0	0	0	0	1	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0020	3290	1	0	1	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0021	3290	1	0	0	1	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0022	3290	1	0	0	0	1	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0023	3290	1	0	0	1	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0024	3290	1	1	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0025	3290	1	0	0	1	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0026	3290	1	0	0	1	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0027	3290	1	1	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0028	3290	1	0	1	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0029	3247	1	0	0	1	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0030	3290	1	1	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0031	3247	1	1	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0032	3290	1	0	0	1	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0033	3247	1	1	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0034	3290	1	0	1	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0035	3290	1	1	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0036	3290	1	0	0	0	1	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0037	3290	1	1	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0038	3290	1	0	1	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0039	3290	1	0	1	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0040	3290	1	1	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0041	3290	1	0	1	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	t0042	3290	1	1	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFRL1_chr6_71283811_71314059	1/0	t0001	7137	110	4	19	64	5	17	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0002	7137	96	4	19	59	6	8	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0003	7137	90	27	19	35	2	7	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0004	7133	11	10	1	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0005	7133	9	5	2	1	0	1	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0006	7137	9	9	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0007	7137	8	6	1	0	0	1	copy fasta	OGFRL1	chr6	71283811	71314059