JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OGFRL1_chr6_71283811_71314059	0/0	t0008	7137	5	0	0	5	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0009	7133	5	0	0	0	0	5	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0010	7137	4	4	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0011	7137	4	0	3	0	0	1	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0012	7137	4	4	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0013	7133	3	0	1	0	2	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0014	7137	3	0	0	3	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0015	7137	3	0	0	3	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0016	7137	3	0	0	3	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0017	7137	3	2	1	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0018	7137	2	2	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0019	7137	2	2	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0020	7137	2	0	2	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0021	7137	2	2	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0022	7137	2	2	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0023	7116	2	0	0	2	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0024	7137	2	2	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0025	7137	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0026	7137	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0027	7137	1	0	1	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0028	7137	1	0	0	0	0	1	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0029	7137	1	0	0	1	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0030	7137	1	0	0	1	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0031	7137	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0032	7137	1	0	0	0	1	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0033	7137	1	0	0	0	0	1	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0034	7137	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0035	7137	1	0	0	1	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0036	7137	1	0	0	1	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0037	7137	1	0	0	0	0	1	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0038	7137	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0039	7137	1	0	1	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0040	7137	1	0	0	0	0	1	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0041	7137	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0042	7137	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0043	7137	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0044	7116	1	0	0	1	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0045	7137	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0046	7137	1	0	1	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0047	7116	1	0	1	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0048	7137	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0049	7137	1	0	0	1	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/1	t0050	7137	1	0	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0051	7137	1	0	1	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0052	7137	1	0	1	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0053	7137	1	0	0	1	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0054	7137	1	0	0	1	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0055	7137	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	t0056	7137	1	0	0	1	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFR_chr20_62799835_62819000	1/0	t0001	377	262	51	47	117	11	35	copy fasta	OGFR	chr20	62799835	62819000