JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OGFR_chr20_62799835_62819000	0/1	t0002	377	153	46	26	64	6	10	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	t0003	377	2	0	1	0	1	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	t0004	377	2	2	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	t0005	377	1	0	0	0	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	t0006	377	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	t0007	377	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGG1_chr3_9744952_9762407	1/1	t0001	593	393	91	74	170	18	38	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	t0002	593	13	0	0	13	0	0	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	t0003	593	12	0	0	12	0	0	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	t0004	593	8	1	1	1	0	5	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	t0005	593	6	0	2	4	0	0	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	t0006	590	3	3	0	0	0	0	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	t0007	593	3	0	0	2	0	1	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	t0008	593	3	1	2	0	0	0	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	t0009	593	1	0	1	0	0	0	copy fasta	OGG1	chr3	9744952	9762407
OGN_chr9_92378268_92409578	1/1	t0001	2511	191	13	41	107	7	21	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0002	2511	69	12	7	40	3	7	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0003	2511	52	35	8	5	2	2	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0004	2511	22	1	4	12	1	4	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0005	2511	10	9	1	0	0	0	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0006	2511	6	1	2	0	0	3	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0007	2511	2	0	0	2	0	0	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0008	2511	2	2	0	0	0	0	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0009	2511	1	0	0	0	0	1	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0010	2511	1	0	0	1	0	0	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0011	2511	1	0	1	0	0	0	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0012	2511	1	0	0	0	1	0	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0013	2511	1	1	0	0	0	0	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0014	2511	1	1	0	0	0	0	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0015	2511	1	0	1	0	0	0	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0016	2511	1	1	0	0	0	0	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0017	2511	1	1	0	0	0	0	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0018	2511	1	1	0	0	0	0	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0019	2511	1	0	1	0	0	0	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	t0020	2511	1	0	0	1	0	0	copy fasta	OGN	chr9	92378268	92409578
OGT_chrX_71528104_71580892	1/1	t0001	2295	125	26	24	48	7	18	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0002	2294	100	21	13	51	2	13	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0003	2294	5	4	1	0	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0004	2293	3	1	0	2	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0005	2294	2	2	0	0	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0006	2291	2	0	0	2	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0007	2293	2	2	0	0	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0008	2294	2	2	0	0	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0009	2294	2	0	0	2	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0010	2296	2	0	0	1	0	1	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0011	2294	1	1	0	0	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0012	2292	1	1	0	0	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0013	2294	1	0	0	1	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0014	2272	1	0	0	1	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0015	2292	1	1	0	0	0	0	copy fasta	OGT	chrX	71528104	71580892