JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OGT_chrX_71528104_71580892	0/0	t0016	2293	1	1	0	0	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0017	2294	1	0	1	0	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0018	2294	1	0	1	0	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0019	2295	1	0	0	1	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0020	2292	1	0	0	1	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0021	2296	1	0	0	1	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	t0022	2294	1	0	1	0	0	0	copy fasta	OGT	chrX	71528104	71580892
OIP5_chr15_41304273_41337591	1/1	t0001	512	346	74	55	164	12	39	copy fasta	OIP5	chr15	41304273	41337591
OIP5_chr15_41304273_41337591	0/0	t0002	512	6	4	2	0	0	0	copy fasta	OIP5	chr15	41304273	41337591
OIP5_chr15_41304273_41337591	0/0	t0003	512	2	2	0	0	0	0	copy fasta	OIP5	chr15	41304273	41337591
OIP5_chr15_41304273_41337591	0/0	t0004	512	1	0	0	0	0	1	copy fasta	OIP5	chr15	41304273	41337591
OIP5_chr15_41304273_41337591	0/0	t0005	508	1	0	1	0	0	0	copy fasta	OIP5	chr15	41304273	41337591
OIT3_chr10_72888739_72938036	1/1	t0001	573	215	85	34	72	6	16	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	t0002	573	44	0	1	36	0	7	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	t0003	573	10	9	1	0	0	0	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	t0004	573	6	0	0	6	0	0	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	t0005	573	1	0	0	0	0	1	copy fasta	OIT3	chr10	72888739	72938036
OLA1_chr2_174067447_174253532	0/0	t0001	3064	43	0	13	28	0	2	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0002	3062	41	2	4	29	2	4	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	1/0	t0003	3061	30	14	5	6	2	2	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0004	3063	19	4	1	9	0	5	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0005	3062	18	8	7	1	1	1	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/1	t0006	3062	15	4	6	0	0	4	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0007	3061	11	2	4	0	1	4	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0008	3062	10	10	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0009	3061	9	9	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0010	3065	9	1	1	6	0	1	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0011	3062	8	0	3	0	1	4	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0012	3061	8	0	4	0	0	4	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0013	3061	6	0	1	0	1	4	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0014	3061	3	3	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0015	3062	3	2	1	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0016	3062	3	0	3	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0017	3060	3	3	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0018	3062	3	3	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0019	3062	2	2	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0020	3062	1	0	0	1	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0021	3061	1	0	0	1	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0022	3061	1	1	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0023	3059	1	1	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0024	3061	1	0	0	1	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0025	3061	1	0	0	0	0	1	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0026	3062	1	1	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0027	3063	1	1	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0028	3061	1	1	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0029	3061	1	1	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0030	3065	1	0	0	1	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0031	3062	1	0	0	0	0	1	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0032	3060	1	1	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0033	3064	1	0	0	1	0	0	copy fasta	OLA1	chr2	174067447	174253532