JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OLA1_chr2_174067447_174253532	0/0	t0034	3061	1	0	1	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0035	3061	1	0	0	0	0	1	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0036	3064	1	0	0	1	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	t0037	3060	1	0	0	1	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLAH_chr10_15038943_15078853	0/0	t0001	831	130	12	14	83	3	18	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0002	830	79	14	15	44	3	3	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0003	831	30	16	10	1	3	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0004	831	25	10	11	0	0	4	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0005	832	20	4	4	5	3	4	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	1/1	t0006	832	20	0	12	1	3	2	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0007	830	18	2	3	12	0	1	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0008	832	15	12	2	1	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0009	830	8	0	0	8	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0010	828	7	0	2	3	0	2	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0011	832	5	0	2	3	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0012	832	5	3	0	0	0	2	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0013	831	5	5	0	0	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0014	833	4	3	1	0	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0015	832	3	1	1	0	0	1	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0016	831	2	0	0	2	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0017	831	2	0	1	0	1	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0018	831	2	0	0	2	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0019	831	2	0	0	2	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0020	833	2	0	1	0	0	1	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0021	832	2	1	0	1	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0022	831	2	1	0	1	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0023	831	2	2	0	0	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0024	831	2	2	0	0	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0025	830	2	0	0	2	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0026	833	1	0	0	0	0	1	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0027	830	1	1	0	0	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0028	831	1	0	0	1	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0029	831	1	0	0	1	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0030	833	1	1	0	0	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0031	830	1	0	0	1	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0032	832	1	1	0	0	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0033	830	1	0	0	0	0	1	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0034	832	1	0	1	0	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0035	831	1	1	0	0	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0036	832	1	1	0	0	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	t0037	828	1	1	0	0	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLFM1_chr9_135082668_135126180	0/0	t0001	1325	100	15	16	47	2	20	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	1/0	t0002	1325	89	7	24	40	5	12	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0003	1325	39	3	14	17	1	4	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0004	1324	33	28	5	0	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0005	1325	23	12	0	8	0	3	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0006	1325	19	0	13	0	3	3	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0007	1324	7	7	0	0	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0008	1324	5	0	2	0	0	3	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0009	1325	5	5	0	0	0	0	copy fasta	OLFM1	chr9	135082668	135126180