JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OLFM1_chr9_135082668_135126180	0/1	t0010	1325	5	1	2	0	0	1	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0011	1324	4	4	0	0	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0012	1325	4	0	0	3	0	1	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0013	1325	3	0	3	0	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0014	1325	3	2	0	0	0	1	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0015	1325	3	2	1	0	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0016	1325	2	0	0	0	1	1	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0017	1325	2	0	1	0	1	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0018	1325	2	1	0	1	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0019	1325	1	1	0	0	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0020	1325	1	0	0	1	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0021	1325	1	1	0	0	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0022	1325	1	0	0	1	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0023	1325	1	0	0	1	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0024	1325	1	0	0	0	0	1	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0025	1325	1	0	0	1	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0026	1325	1	0	0	1	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0027	1325	1	0	0	1	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0028	1288	1	1	0	0	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0029	1325	1	0	1	0	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	t0030	1325	1	0	0	0	1	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM2_chr19_9848718_9941515	0/1	t0001	618	242	70	39	90	10	32	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	1/0	t0002	618	69	10	9	43	0	6	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	t0003	619	6	1	2	3	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	t0004	618	5	0	4	0	0	1	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	t0005	618	4	0	0	4	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	t0006	614	4	4	0	0	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	t0007	614	3	3	0	0	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	t0008	619	1	0	1	0	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	t0009	618	1	0	1	0	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	t0010	618	1	1	0	0	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	t0011	618	1	1	0	0	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	t0012	604	1	0	0	0	0	1	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	t0013	618	1	0	0	1	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	t0014	618	1	0	1	0	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	t0015	603	1	0	0	1	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	t0016	618	1	0	1	0	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM3_chr1_101797560_102001926	1/0	t0001	1789	112	36	22	34	1	18	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0002	1790	97	19	12	58	2	6	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/1	t0003	1784	37	11	3	11	1	10	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0004	1785	30	4	5	15	0	6	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0005	1790	3	0	0	3	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0006	1788	3	2	1	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0007	1789	3	3	0	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0008	1789	3	0	3	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0009	1784	3	1	2	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0010	1790	2	2	0	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0011	1789	2	0	0	2	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0012	1789	2	2	0	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0013	1784	2	0	2	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926