JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OLFM3_chr1_101797560_102001926	0/0	t0014	1789	1	0	0	1	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0015	1790	1	0	0	1	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0016	1789	1	0	1	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0017	1789	1	1	0	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0018	1783	1	1	0	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0019	1785	1	0	0	1	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	t0020	1784	1	0	1	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM4_chr13_53023813_53057057	0/0	t0001	1311	181	9	42	103	8	19	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0002	1311	59	4	3	45	0	7	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/1	t0003	1311	47	3	10	26	1	6	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	1/0	t0004	1311	40	6	16	6	1	10	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0005	1311	34	14	0	14	2	4	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0006	1311	21	16	3	1	0	1	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0007	1311	16	1	1	14	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0008	1311	15	13	2	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0009	1307	9	8	1	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0010	1311	9	0	0	8	0	1	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0011	1311	6	1	2	2	0	1	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0012	1311	5	5	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0013	1311	3	3	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0014	1311	3	2	1	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0015	1311	3	3	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0016	1311	3	3	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0017	1311	3	2	1	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0018	1311	2	0	2	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0019	1311	1	0	0	1	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0020	1311	1	1	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0021	1311	1	0	1	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0022	1311	1	1	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0023	1311	1	1	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0024	1311	1	0	1	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	t0025	1311	1	0	0	0	0	1	copy fasta	OLFM4	chr13	53023813	53057057
OLFML1_chr11_7480506_7516377	1/0	t0001	1560	156	28	32	74	5	16	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/1	t0002	1560	139	37	25	50	4	22	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	t0003	1560	62	11	14	22	3	12	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	t0004	1556	8	1	5	0	2	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	t0005	1560	6	5	1	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	t0006	1560	3	0	0	3	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	t0007	1560	2	1	1	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	t0008	1560	2	2	0	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	t0009	1560	2	2	0	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	t0010	1560	1	1	0	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	t0011	1560	1	0	0	1	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	t0012	1560	1	0	0	1	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	t0013	1560	1	1	0	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	t0014	1560	1	1	0	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	t0015	1560	1	1	0	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	t0016	1560	1	1	0	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	t0017	1560	1	0	0	1	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML2A_chr9_124772133_124819882	0/1	t0001	4610	139	18	30	61	13	16	copy fasta	OLFML2A	chr9	124772133	124819882