Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABTB1_chr3_127667952_127685926	0/0	t0012	526	1	0	1	0	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	t0013	526	1	1	0	0	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB2_chr11_34145987_34363010	0/1	t0001	1828	134	27	33	50	12	11	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0002	1828	47	18	1	28	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0003	1828	24	5	10	4	0	5	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0004	1831	4	4	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0005	1828	4	3	1	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	1/0	t0006	1828	3	2	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0007	1828	3	0	1	0	0	2	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0008	1828	2	2	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0009	1828	2	2	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0010	1828	2	2	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0011	1828	2	2	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0012	1828	2	2	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0013	1828	2	0	2	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0014	1828	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0015	1828	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0016	1828	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0017	1828	1	0	0	1	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0018	1828	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0019	1835	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0020	1828	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0021	1828	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0022	1831	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0023	1828	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0024	1828	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0025	1828	1	0	0	1	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0026	1835	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0027	1828	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	t0028	1828	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB3_chr12_107313434_107664642	0/0	t0001	2432	38	11	7	11	1	8	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0002	2432	31	19	5	5	1	1	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0003	2432	22	3	5	8	2	4	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0004	2432	17	4	4	7	0	2	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0005	2432	12	2	3	4	1	2	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0006	2432	10	5	1	3	1	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0007	2432	9	1	2	3	2	1	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0008	2432	8	4	3	0	0	1	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0009	2432	5	5	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0010	2432	3	0	0	3	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0011	2432	2	2	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0012	2432	2	0	0	1	0	1	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0013	2432	2	2	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0014	2432	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0015	2432	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0016	2432	1	0	0	1	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0017	2432	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0018	2432	1	0	0	1	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0019	2432	1	0	0	0	0	1	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0020	2432	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642