Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARSI_chr5_150291343_150307905	0/1	t0006	1404	10	4	1	2	2	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0007	1404	7	4	2	0	0	1	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0008	1404	5	5	0	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0009	1404	3	3	0	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0010	1404	3	2	1	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0011	1404	3	3	0	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0012	1404	3	1	2	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0013	1404	2	0	0	0	0	2	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0014	1404	2	2	0	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0015	1404	1	0	0	1	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0016	1404	1	0	0	1	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0017	1404	1	1	0	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0018	1404	1	0	0	1	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	t0019	1392	1	0	0	1	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSJ_chr4_113895284_113984647	0/0	t0001	2760	90	8	12	57	2	11	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	1/0	t0002	2804	56	20	10	17	2	6	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/1	t0003	2761	51	2	17	18	1	12	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0004	2805	30	2	3	20	1	4	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0005	2804	19	1	6	10	1	1	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0006	2760	15	0	3	12	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0007	2802	14	13	1	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0008	2805	9	1	0	8	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0009	2802	5	5	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0010	2804	5	0	2	3	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0011	2760	5	5	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0012	2802	5	5	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0013	2804	4	4	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0014	2799	4	4	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0015	2804	3	2	1	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0016	2761	3	0	0	3	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0017	2760	2	1	1	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0018	2804	2	2	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0019	2804	2	2	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0020	2760	2	2	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0021	2804	2	2	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0022	2761	2	0	1	0	0	1	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0023	2805	2	1	0	0	0	1	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0024	2803	2	1	0	0	0	1	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0025	2760	1	1	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0026	2802	1	1	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0027	2804	1	1	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0028	2804	1	0	0	1	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0029	2804	1	0	0	1	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0030	2760	1	1	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0031	2804	1	1	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0032	2799	1	1	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0033	2804	1	1	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0034	2760	1	0	0	0	1	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0035	2760	1	0	1	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	t0036	2760	1	0	0	0	0	1	copy fasta	ARSJ	chr4	113895284	113984647