JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OLFML2A_chr9_124772133_124819882	0/0	t0002	4609	87	17	4	58	0	8	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0003	4610	30	1	7	18	1	3	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0004	4610	26	25	1	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0005	4610	11	11	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0006	4609	8	1	1	0	2	4	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0007	4610	8	0	0	8	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0008	4610	6	0	0	6	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0009	4604	5	0	5	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	1/0	t0010	4609	4	3	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0011	4610	4	0	0	3	0	1	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0012	4610	4	0	0	3	0	1	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0013	4610	3	2	1	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0014	4610	3	0	1	0	0	2	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0015	4611	3	3	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0016	4610	2	1	1	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0017	4610	2	0	0	2	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0018	4610	2	0	2	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0019	4610	2	0	0	2	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0020	4609	2	2	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0021	4610	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0022	4610	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0023	4610	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0024	4609	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0025	4610	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0026	4610	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0027	4610	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0028	4610	1	0	1	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0029	4610	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0030	4610	1	0	1	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0031	4610	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0032	4610	1	0	0	0	0	1	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0033	4599	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0034	4610	1	0	1	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0035	4609	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0036	4610	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0037	4610	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0038	4610	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0039	4610	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0040	4611	1	0	1	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0041	4609	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0042	4610	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0043	4610	1	0	1	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0044	4609	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0045	4609	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0046	4608	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0047	4610	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0048	4611	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	t0049	4610	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2B_chr1_161978192_162028869	1/1	t0001	923	91	24	10	39	1	15	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0002	923	74	4	18	33	8	11	copy fasta	OLFML2B	chr1	161978192	162028869