JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OLFML2B_chr1_161978192_162028869	0/0	t0003	924	64	26	9	14	3	12	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0004	924	48	17	7	22	0	2	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0005	923	36	0	4	32	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0006	924	18	0	0	18	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0007	923	10	1	9	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0008	925	7	7	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0009	923	6	0	0	6	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0010	923	4	3	1	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0011	925	4	4	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0012	923	2	0	1	0	0	1	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0013	923	2	1	0	0	0	1	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0014	924	2	2	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0015	924	2	0	0	2	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0016	923	2	0	0	2	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0017	924	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0018	925	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0019	925	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0020	923	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0021	924	1	0	0	1	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0022	923	1	0	1	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0023	923	1	0	0	1	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0024	924	1	0	0	1	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0025	923	1	0	0	1	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0026	924	1	0	0	0	0	1	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0027	923	1	0	0	0	0	1	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	t0028	924	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML3_chr1_113974474_113987253	1/1	t0001	528	352	60	69	160	14	47	copy fasta	OLFML3	chr1	113974474	113987253
OLFML3_chr1_113974474_113987253	0/0	t0002	528	92	19	12	56	2	3	copy fasta	OLFML3	chr1	113974474	113987253
OLFML3_chr1_113974474_113987253	0/0	t0003	528	13	12	1	0	0	0	copy fasta	OLFML3	chr1	113974474	113987253
OLFML3_chr1_113974474_113987253	0/0	t0004	528	2	2	0	0	0	0	copy fasta	OLFML3	chr1	113974474	113987253
OLFML3_chr1_113974474_113987253	0/0	t0005	528	1	1	0	0	0	0	copy fasta	OLFML3	chr1	113974474	113987253
OLIG1_chr21_33065141_33077413	1/1	t0001	1458	352	73	67	173	9	28	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	t0002	1458	46	10	6	15	1	14	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	t0003	1458	14	0	0	14	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	t0004	1458	12	0	7	0	4	1	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	t0005	1459	9	0	2	4	0	3	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	t0006	1458	6	0	1	5	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	t0007	1458	4	4	0	0	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	t0008	1458	3	3	0	0	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	t0009	1458	2	2	0	0	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	t0010	1458	1	0	0	1	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	t0011	1458	1	0	0	0	0	1	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	t0012	1458	1	1	0	0	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	t0013	1458	1	0	1	0	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	t0014	1458	1	0	0	0	0	1	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	t0015	1458	1	1	0	0	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG2_chr21_33020935_33034185	1/1	t0001	1506	98	20	11	52	3	10	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	t0002	1506	71	2	13	50	0	6	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	t0003	1506	70	20	9	27	3	11	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	t0004	1506	58	3	26	22	3	4	copy fasta	OLIG2	chr21	33020935	33034185