JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OLIG2_chr21_33020935_33034185	0/0	t0005	1506	53	3	13	19	7	11	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	t0006	1506	41	10	6	19	2	4	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	t0007	1506	29	26	3	0	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	t0008	1506	10	9	1	0	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	t0009	1506	7	0	0	7	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	t0010	1506	2	0	2	0	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	t0011	1506	2	0	1	1	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	t0012	1506	2	1	0	0	0	1	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	t0013	1506	1	1	0	0	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	t0014	1506	1	0	0	0	0	1	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	t0015	1506	1	1	0	0	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	t0016	1506	1	0	0	1	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	t0017	1506	1	0	1	0	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG3_chr6_137487199_137499394	1/0	t0001	1378	257	70	55	84	14	33	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/1	t0002	1379	177	18	27	121	1	9	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	t0003	1379	3	3	0	0	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	t0004	1378	2	2	0	0	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	t0005	1378	2	2	0	0	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	t0006	1378	1	0	0	0	0	1	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	t0007	1378	1	1	0	0	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	t0008	1378	1	0	0	0	1	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	t0009	1378	1	0	0	0	0	1	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	t0010	1378	1	0	0	0	0	1	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	t0011	1378	1	1	0	0	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	t0012	1378	1	0	0	0	0	1	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	t0013	1379	1	0	0	1	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	t0014	1379	1	0	0	1	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	t0015	1379	1	0	0	1	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	t0016	1378	1	1	0	0	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLR1_chr12_10153301_10177132	0/0	t0001	1639	135	11	14	90	3	17	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0002	1634	88	12	28	36	4	8	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/1	t0003	1639	82	20	4	45	5	7	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0004	1643	11	9	1	0	0	1	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0005	1645	10	9	1	0	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0006	1635	8	7	1	0	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0007	1639	8	0	5	0	3	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0008	1639	7	0	3	1	1	2	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0009	1643	6	5	1	0	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0010	1636	6	6	0	0	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0011	1641	5	0	2	3	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0012	1641	5	0	1	3	0	1	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0013	1635	4	0	0	4	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	1/0	t0014	1635	3	1	1	0	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0015	1635	3	2	1	0	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0016	1634	3	0	0	3	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0017	1639	2	0	2	0	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0018	1645	2	2	0	0	0	0	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0019	1637	2	0	0	0	0	2	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0020	1633	2	0	1	0	0	1	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	t0021	1635	1	0	1	0	0	0	copy fasta	OLR1	chr12	10153301	10177132